Science online, field of monocultures edition

cornfield Photo by Jvstin.
  • This week at Nothing in Biology Makes Sense! Devin Drown reviews The Adaptive Landscape in Evolutionary Biology.
  • And at the Molecular Ecologist: The carnival of knowing what I know now.
  • Surprise? The biodiversity of a cornfield is pretty depressing.
  • Handy. Tinkering with fishes’ developmental genes recreates (a bit) of the evolution of fins into digits.
  • Of course, winter means wearing more clothes, which harbor lice … Napoleon’s invasion of Russia was stymied not by winter, but by lice carrying typhus.
  • It is, as they say, all in your head. The physical reality underlying near-death experiences.
  • A mess, but one we need to clean up. Race, poverty, and access to education.
  • Inactivated what now? A new therapy for leukemia that uses inactivated HIV to reprogram white blood cells looks promising.
  • For all the good that will do. Climate scientists are starting to use alarming talk titles at conferences.
  • A crucial question. How well would wine grapes really grow in world of Game of Thrones?

The living rainbow: Er, kinda …

06 Drosophila melanogater Mating Mating fruit flies. Photo by Image Editor.

I just saw this from Christopher Ryan, coauthor of Sex at Dawn, on Twitter:

Foundational Evolutionary Psychology paper called into serious question. Randy males/choosy females? Maybe not. npr.org/blogs/13.7/201…

— Christopher Ryan (@ChrisRyanPhD) December 13, 2012

As I tweeted in response: er, kinda.

Ryan linked to some new discussion of a study I covered back in June. That paper found a major flaw in a 1948 study of Drosophila fruit flies that was the first to clearly support a component of sexual selection theory — the idea that males maximize their evolutionary fitness (i.e., the number of offspring they sire) by having many mates, but females maximize fitness by selecting just a single “best” mate.

The author of the 1948 study, A.J. Bateman, tracked the parentage of flies in his study — which was necessary to tally the offspring of each male and female fly — using visible “marker” mutations. The new study’s authors, Patricia Gowaty et al., tried to replicate Bateman’s experiment, and discovered that some of the marker mutations were so disabling to the flies that they almost certainly biased Bateman’s results.

That knocks the legs out from under Bateman’s experiment. But it doesn’t really deal a knockout punch to sexual selection, much less to evolutionary psychology. Yes, evo psych (especially the kind that I really despise) tends to default to Bateman’s “randy males/choosy females” model. But evo psych, which is primarily about the recent evolutionary history of human behavior, isn’t the same thing as sexual selection theory, which is about the evolution of mating systems in, well, pretty much anything that reproduces sexually.

And, in fact, new studies with better data do support Bateman’s model for other non-human animals. Just a couple weeks ago, Science published a very thorough study on pronghorn antelope that tracked the interaction of Bateman-style sexual selection and regular old natural selection over a decade. (One of that study’s coauthors, Stacey Dunn, is a personal friend — I’ll be running an interview with her over at The Molecular Ecologist next week.) That work is based on modern genetic markers, which have none of the drawbacks of Bateman’s method.

But all of this is sort of beside the point, as far as the rightness or wrongness of evolutionary psychology goes, since fruit flies and pronghorn aren’t humans. There’s a huge diversity of sexual expression across the animal kingdom, and it’s absurd to think that we can make any particular conclusion about recent human evolution based on what works for insects or ruminants.

If evolutionary psychologists would be wrong to use Bateman’s fruit flies to support a particular hypothesis about human sexuality — and they would be — then those of us who disagree with them don’t have any reason to crow about Bateman’s mistakes.◼

References

Byers, J. & Dunn, S. 2012. Bateman in nature: Predation on offspring reduces the potential for sexual selection. Science, 338: 802–804. doi: 10.1126/science.1224660.

Gowaty, P.A., Kim, Y.-K. & Anderson, W.W. 2012. No evidence of sexual selection in a repetition of Bateman’s classic study of Drosophila melanogaster. Proceedings of the National Academy of Sciences, doi: 10.1073/pnas.1207851109.

The Molecular Ecologist: The Carnival of knowing what I know now

This advice won’t even cost you five cents. Image via nola.com.

That carnival of advice based on personal experience from previous career stages? Yep, it’s online today at The Molecular Ecologist. Head on over for a heaping helping of introspection, snark, and (mostly) sober reflection from across the science blogosphere.◼

Science online, half-baked careers edition

Mount Saint Helens Mount Saint Helens. Photo by prorallypix.

Exxon hates your children

To be fair, most of the rest of us aren’t all that fond of them, either. But then most of the rest of us don’t recieve billions in subsidies from the U.S. Federal government.

Via Grist.◼

Nothing in Biology Makes Sense: Making the jump from the mitochondrion

SEM_mitochondria A mitochondrion. Photo by Jay Reimer.

This week at Nothing in Biology Makes Sense, Amy Dapper discusses co-blogger Devin Drown’s new study of the two not-quite separate genomes within every cell in your body:

Unlike our other organelles, mitochondria carry their own separate, circular genome. Furthermore, mitochondria are maternally inherited via the cytoplasm of the egg. This means that unlike the rest of the genome, the mitochondrial genome is inherited only from mom. Interestingly, over time, some of the genes that are important for the function of the mitochondria have moved from the mitochondrial genome to the nuclear genome.

That movement of genes from the mitochondria to the nucleus has some interesting evolutionary consequences, as you’ll find out if you read the whole thing.◼

Science online, counting the counters edition

chicken Photo by ianturton.

Nothing in Biology Makes Sense: The rationality of science denialism

Denial Photo by cesarastudillo.

This week at Nothing in Biology Makes Sense!, Sarah Hird delves into the psychology of science denialism to understand why facts alone can’t help a creationist:

Rosenau makes the case that when we (scientists/science supporters) talk to deniers/agnostics, conversations that begin in the scientific realm very quickly turn to religion, personal freedom, morality and even capitalism. The denial stems from how people identify themselves and how they see the world; it can be rooted in fear, anger and distrust of things outside their social group (religious and political affiliations are two major such groups). … The denial is not rooted in scientific facts.

To learn what does help denialists come around, go read the whole thing.◼

Science online, best model kit ever edition

111/365 - You’re My Boy, Blue The whale today. Photo by djwtwo.
  • This week at The Molecular Ecologist: How to pick a programming language.
  • Also, why biologists still speak Latin. How the North American turkey was, indirectly, named after the Eurasian nation-state Turkey.
  • Not-bad news, everyone! Americans will, sometimes, vote for better funding of public universities.
  • Terrible news, everyone. The climate change prognosis is looking a lot worse.
  • No word about the squid, though. How the American Museum of Natural History built a life-size blue whale before anyone involved had actaully seen a whole blue whale, in two parts.
  • Yes, there’s oxytocin in nematodes. It’s called nematocin.
  • It’s just not as easy to see. Black people do, in fact, get sunburns.
  • Tiny pamphlets about abstinence? What do you do when a protected species is about to interbreed itself to extinction?
  • Go ahead, break a leg. (Not really.) Raising a baby doesn’t necessarily have to be bad for a woman’s bones.

The Molecular Ecologist: Which programming languages should I learn for bioinformatics?

Over at The Molecular Ecologist, Mark Christie runs down the considerations to take into account when you’re thinking about making the effort to learn a programming language — he focuses specifically on bioinformatics, but his points really apply for just about anything you’d do with a script.

Perl and Python programs are (typically) compiled each time before they run and they are often not compiled to the same extent as C and C++ (but see PyPy for Python). This means that C and C++ typically run faster and require less memory after a program has been completed. Like most things in life, however, there is a tradeoff in that C and C++ programs usually require more lines of code because there are more details that have to be specified in each program. Thus there is a tradeoff between time spent developing, writing, and debugging code and the time that the program takes to run through completion.

Planning your first bioinformatics project? You should probably go read the whole thing.◼