Science online, roller derby to tenure edition

coconut You’re not hydrated—you’ve got two empty halves of coconuts and you’re banging them together. Photo by Minette Layne.
  • This week at Nothing in Biology Makes Sense! Sarah Hird reports on a workshop, The Ecology and Evolution of Host-Associated Microbiota.
  • And at The Molecular Ecologist: Making maps with R.
  • Applying sports psychology to an academic career, part I and part II—and further thoughts on that theme.
  • Prepare for a whole week of Friday Weird Science. Scicurious gets ready to blog the Ig-Nobels.
  • Endangered species, catfish, and—gasp—American ginseng. What a DNA barcoding study found in dietary supplements.
  • Bird brains. The only thing that drives Creationists crazier than fossils is fossils of feathered dinosaurs.
  • The stuff from the tap still wins. Running the nutritional—and hydrational—numbers on coconut water.
  • Maybe if they drink enough coconut water? Could humans become photosynthetic?
  • Splitters v lumpers, round eight thousand. The arguments, pro and con, on whether to split genus Anolis.
  • Convenient. Turns out that many of the most-sustainable and least-mercury-laden fish species are also better for you.

Still running …

Me, running the Portland Marathon three years ago. Looks fun, right?.

Hey, remember that thing where I’m running a 5k, then a marathon, to raise money for the campaign against an amendment to the Minnesota Constitution that would ban same-sex marriage?

Well, so far readers have made some very nice contributions—$110, to be exact. Which is great! But I have reason to suspect that a lot of folks still haven’t chipped in. I know, I know. You, my readers, are about evenly divided between impoverished, ramen-subsisting graduate students and the kind of young, hip professionals who just blew their discretionary budget on a new iPhone—but you have five bucks, right? Minnesotans United for All Families, the campaign against the amendment, would be happy to have five bucks. It’s not a lot, but it would add up. The average post at D&T scores a couple hundred pageviews; if every page-viewing person kicked in a fiver, we’re talking folding money.

And what will your five bucks will go toward? More phone banks to make our case to each and every Minnesotan we can reach, more canvassing for support, and, as we get closer to the election, TV ads like this brand new one:

Seriously: go chip in five bucks?◼

The lab is open!

The Best Science Writing Online 2012, the latest incarnation of the Open Lab anthology of online science writing, is officially available for purchase today. This year’s collection includes my “Intelligent homosexual’s guide to natural selection” alongside contributions from many far better popular science writers—including Carl Zimmer, Eric M. Johnson, Christie Wilcox, Maryn McKenna, Brian Switek, Ed Yong, and Maggie Koerth-Baker.

To mark the release, Open Lab series editor Bora Zivkovic and 2012 edition editor Jennifer Ouellette will be holding an online chat about the book, the history of OpenLab, and how the 2012 edition came together. It’ll be over at the Scientific American website, starting at noon Eastern time (GMT -5h).◼

Science online, grafted glitter-berries edition

Swimming with Dolphins These two mammalian species evolved bigger brains via changes in the same gene. Photo by Sagolla.

Give the NSF a piece of your mind

This last year, the Biological Sciences Directorate at the National Science Foundation—one of the biggest single funders of ecology and evolutionary biology research in the U.S.—introduced a new process for reviewing grant proposals.

Lots of other folks with better first-hand knowledge have written about the new process. The key change is that, where formerly NSF offered two opportunities per year to submit a proposal for funds, the new procedures introduced a “pre-proposal” stage in which biologists write a much shorter pre-proposal first. If this mini-proposal is judged worthy, the applicant is then invited to submit a full proposal several months later.

This effectively reduced the workload (in terms of full proposals) for NSF reviewers, and it makes the funding rate for “full” proposals look much better—as long as you don’t look too closely at the triage (i.e., rejection) rate for preproposals, which, eek. But it also cut the “real” opportunities to submit a grant proposal in half. If you’re trying to land NSF funding in the few short years before a tenure review, that might make you a bit … concerned.

So a bunch of biologists wrote to NSF about this [PDF], pointing out that the new process

  • Creates a much longer “lag time” between submitting a new idea as a proposal and recieving money to pursue the idea, effectively slowing down the pace of basic science;
  • Reduces the scope and complexity of ideas that can be proposed; and
  • Provides less feedback for applicants, which makes it difficult to improve rejected proposals for the next round of applications.

That letter, and followup discussions, got NSF thinking about (or maybe thinking about thinking about) some changes to the new process. I’ve just learned via an e-mail from the Society for the Study of Evolution that there’s a very short survey that interested parties (i.e., those of us who study ecology and evolutionary biology, and might like the NSF to pay for some of our work) should fill out by next Tuesday, the 18th. It took me about a minute. So maybe go do it now?◼

The Molecular Ecologist: ABC, quick as A-B-C

If I said you had a nice posterior Reverend Bayes, would you take offense? Photo via WikiMedia Commons.

Over at The Molecular Ecologist, new contributor Peter Fields—a Ph.D. student studying plant-pathogen coevolution at the University of Virginia—writes about approximate Bayesian computation and a new approach to this still-developing method of statistical inference that can make it quite a bit faster.

ABC functions upon the rationale that the likelihood might be approximated through the use of simulation and simulation summary statistics2, and that the evaluation of model fit to a dataset can be identified through a comparison of Ss derived from simulated scenarios and calculation of those same summaries on an observed, empirical dataset. In theory, simulation summaries are selected to provide maximal distinction amongst competing models. In practice, identifying these summaries isn’t always easy, and is the object of continued research3

For an introduction to ABC, and a description of the new approach, go read the whole thing.◼

Running for marriage equality

Regular readers will be well aware that two of my principle extracurricular activities are running and volunteering on the campaign against an anti-gay-marriage amendment to the Minnesota state constitution. Now, with the election drawing closer, I’m going to combine the two, and run in support of marriage equality.

There is, of course, a long and storied history of homosexuals running for truth, justice, and the (North) American way, as the Kids in the Hall remind us.

This faggot will be running in not one but two events before the election: the 5k Big Gay Race on Saturday, 29 September; and then the Mankato Marathon on Sunday, 21 October. (That’ll be my fifth marathon!) I propose that you, my dozens of readers, commemorate these efforts and help keep bigotry out of Minnesota’s constitution by contributing to Minnesotans United for All Families, the campaign against the amendment.

I suggest you donate $5 ($1/kilometer) to sponsor the 5k; or either $26.21 ($1/mile) or $42.19 ($1/kilometer) to sponsor the marathon. I’ll even add an extra inducement: anyone who donates at least $5 and lets me know via e-mail will go into a drawing to recieve a free D&T tee shirt of his or her choice.

Ready? Set? Go donate.◼

Postscript: For meditation on the appropriateness of the use of the word “faggot” in this context, please direct your attention/questions/objections to Scott Thompson and Lexicon Valley, in that order.

Vote Sensible, 2012

More and more, I find myself thinking about U.S. politics in terms of the dichotomy set up in Monty Python’s “Election night” skit: the Senisble Party versus the Silly Party (and the barely-functional Very Silly Party). I’d say this speech (and what we saw from the opposition last week) pretty much bears that out.

So, vote Sensible.◼

Science online, organic marmots edition

Fresh Organic Strawberries Organic strawberries. Photo by VancityAllie.

Carnival of Evolution, September 2012

Dinner! Photo by basykes.

The monthly roundup of online writing about descent with modification is online at the Stochastic Scientist. Dig in!◼