Science online, unhelpful anthropomorphism edition

Young chimpanzees at play. Photo by Tambako the Jaguar.

 ◼

Coming out day: A few more things

Yes, National Coming Out Day was “officially” yesterday, but these are worth following up with:

 ◼

Happy National Coming Out Day

Photo by massdistraction.

October 11 is National Coming Out Day, a day for gay, lesbian, bisexual, and transgendered folks to come out, and to recognize the importance that coming out and being out has had in the our progress towards full civil equality.

Being open about our lives and loves is an everyday task, but it has real political implications—straight people who know they have a queer friend or family member are much more likely to support treating us like full and equal citizens, and queer kids growing up in a far from queer-friendly world need all the positive examples and encouragement they can get. For more in the way of the latter, there’s It Gets Better, and the Pride Month Diversity in Science Carnival, hosted right here at Denim and Tweed. For more on the political side, let me suggest the national campaign Freedom to Marry, the kick-ass folks at the ACLU; or Minnesotans United for All Families, the campaign to stop an anti-marriage amendment to the state constitution.

Oh, and if you happen to have just come out today—congratulations! ◼

Science online, whales’ teeth and hand driers edition

“… all they’re doing is shooting a blast of hot bacteria full force onto your hands.” Photo by eatmorechips.
  • Much like my transition to regular coffee drinking. Ancient proto-whales’ transition from terrestrial to aquatic life is recorded in their teeth.
  • Non-anthropologists should also take note. Anthropology gets a dressing down, from an anthropologist.
  • So is it possible to get high on fake weed? The placebo effect may work through the same biochemistry as a marijuana high.
  • Pretty fast, all things considered. The path of a publication, traced from initial observation to acceptance, over a mere three years.
  • Hot-air driers: gross as well as ineffective. The disease-fighting possibilities, and failures, of public restroom design.
  • Science writers commemorate teachers who got them started.
  • I, for one, etc. A new brain-machine-brain interface gives monkeys prosthetic limbs with a sense of touch. (See also.)
  • Eventually. Tortoises are not social animals, but they can learn by watching other tortoises.
  • With nuance. Charles Darwin, animal rights advocate.

 ◼

Carnival of Evolution, October 2011

Photo by Dave77459.

The Carnival of Evolution, a monthly roundup of online writing about the science and politics of evolutionary biology, is now up at EvoEcoLab—apparently this one is the 40th edition! Check it out for posts by Jerry Coyne, Ed Yong, Greg Laden, and yours truly. ◼

It’s that time of year again!

The Portland Marathon two years ago. Looks fun, right?.

This weekend I’m flying out to Portland for the 2011 Portland Marathon, my third. It’s been a bit tricky keeping up with my training on top of moving to a new town and starting up a postdoc with a whole new study system, but I think I’ll be ready. While I pack, why not check out my post on the occasion of last year’s Seattle Marathon, in which I discuss what I’ve learned over a couple years of long runs and leg cramps. It all still applies.

I can make it through even a half-marathon on a good breakfast and carefully-judged pre-race hydration, but to go much longer I need more food (and water) mid-run. The long-term exercise involved in a long race is fueled by a combination of fat reserves and glycogen stored in the liver and muscle tissue. Glycogen is the more efficient fuel, so as exercise intensity increases, muscles draw on it more heavily.

For far more detail on evidence-based endurance training approaches, I suggest Dave Munger’s great science-based running. See you in 26.2 miles! ◼

The best chocolate chip cookies I know how to make

Cookies! Photo by jby.

It’s been ages since I posted a recipe, but I’m still doing lots of cooking. So, here’s another staple in my personal recipe book: chocolate chip cookies. I found the recipe on AllRecipes.com, but I’ve incorporated a couple of stylistic quirks from the New York Times food section.

First, I refrigerate the dough at least overnight, or up to 48 hours, before baking. This lets the liquid (mainly eggs) integrate with the flour, for better texture. It also breaks up the work so it doesn’t take a whole afternoon at once.

Second, I make them big. I form balls of dough a little less than the size of a golf ball, so the entire recipe makes exactly 24 cookies, at a rate of six to a cookie sheet-ful. Big cookies end up with a range of texture from a crisper edge to a chewy center, which you can’t get if you make them too small. And I can tell you from personal experience that big cookies make a serious impression when you bring them to a lab meeting, or (as I did with these) your dissertation defense.

Follow the jump for the recipe!

  • 2/3 cup shortening
  • 2/3 cup unsalted butter
  • 1 cup white, granulated sugar
  • 1 cup brown sugar, tamped down
  • 2 eggs
  • 1 tablespoon vanilla extract
  • 3 1/2 cups all-purpose flour
  • 1 teaspoon baking soda
  • 1 teaspoon salt
  • 1 cup chopped pecans (optional)
  • 2 cups chocolate chips (emphatically not optional)

Blend together the shortening, butter, white and brown sugar, eggs, and vanilla. (Go ahead and soften up the butter and shortening in the microwave, if you’re blending by hand.) Sift together the flour, baking soda, and salt; mix this into the wet ingredients until they’re well blended. Finally, mix in the nuts and chocolate chips—I find this is most easily done by hand. Cover the dough and stick it in the refrigerator at least overnight, or up to 48 hours.

When you’re ready to bake, preheat the oven to 375ºF. Pull the dough out of the refrigerator. Line a cookie sheet with baking parchment, which makes cookie removal and cleanup much easier. Form the dough into not-quite-golf-ball-sized spheroids, and place about six on a single cookie sheet. Bake for about 14 minutes, or until the very edges of the cookies turn brown and dry.

I’ve come to feel strongly that you need nuts in your chocolate chip cookies, for crunchy contrast with the melted chocolate chips and chewy dough. Pecans are my preference, but go ahead and substitute walnuts if you must, or use no nuts at all. You Philistine.

You could also make the recipe vegan, just by substituting more shortening (and a little water) for the butter, and using vegan chocolate chips—but I haven’t tried this, so I can’t vouch for it. I do know that spelt flour works perfectly well with the recipe, in case you want to reduce gluten.

Finally, I like to use Ghiradelli’s 60% cacao chocolate chips, which are a bit flatter than typical chocolate chips, and nicely bittersweet. They’re pricey, but these cookies are an indulgence anyway. This kind of baking is absolutely part of a balanced, healthy diet, especially if you bake them to share. ◼

Science online, miraculous maps edition

Nothing like the real thing. Photo by Jamie Anderson.

And now video, via Kevin Zelnio, of the sand tiger shark’s embryonic, siblicidal cannibalism. Ew?


 ◼

What does evolution have to do with the cost of police in Switzerland? Probably not much.

Lucerne, Switzerland. Photo by Jamie McHale.

ResearchBlogging.orgSo a little while ago, I was perusing the latest from PLoS ONE while doing some low-attention-requiring lab work Monday afternoon, and a title caught my eye: “A test of evolutionary policing theory with data from human societies.” Oh, hey. That looked interesting.

The paper’s author, Rolf Kümmerli, claims to have found evidence for a particular kind of evolutionary model of cooperation in recent economic data from Switzerland. The problem Kümmerli addresses is a classic one: from the perspective of natural selection, individuals (apparently) have little evolutionary incentive to cooperate, unless they’re relatives. And yet, we see cooperation in human societies.

One solution to this quandary has been group-level selection, which is a whole ‘nother kettle of worms. Another is that policing behavior could evolve to help keep groups of less-closely-related people cooperative. Of course, modern human societies are a long way past the days when most of us lived in villages that were also basically big extended families. Kümmerli proposes that we might use some sort of rule of behavioral thumb to (unconsciously) assess how likely it is we’re interacting with close relatives—which is less likely in bigger communities, and communities with larger immigrant populations.

Er, what?

Kümmerli compiled data from the Swiss national government, comparing crime rates and police expenditures to the population size percentage of foreign nationals living in every Swiss canton, or administrative region. Rather than just use the raw population size or percentage of foreigners in each canton, he constructed an index that combines the two. And he did, indeed, find that as this index of “dissimilarity” increases, so do crime rates and expenditures on police.

Kümmerli concludes that his data support the “evolutionary policing theory.” But what has he actually shown? Crime happens for lots of reasons, not necessarily because people somehow “know” to behave more cooperatively in small towns. Most glaringly, Kümmerli’s data set includes no data on poverty, which seem like an obvious alternative explanation for the pattern—bigger communities with more immigrants also often have more poor people, and poverty is certainly related to crime rates.

Swiss police. Photo by Kecko.

Fortunately, the data Kümmerli uses, and many more variables, are all freely available online through the Swiss Statistical Encyclopedia. So I took a couple hours to play around with the raw numbers. I did all my statistical work in good old R.

For each of the 26 cantons, I compiled the number of reported crimes in 2009, the number of citizens (in thousands) in 2009, the percentage of foreign residents in 2009, the percentage of unemployed residents in 2010, annual expenditures on police in 2008, and—just for the heck of it—the percentage of commuters using public transit in 2000. As in Kümmerli’s data set, each statistic is the most recent value available. I didn’t try to replicate Kümmerli’s “dissimilarity” index because it’s not clearly explained in the paper; but I did log-transform the crime rate, the number of citizens, police expenditures, the unemployment rate, and the transit use rate to make them better conform to a normal distribution.

Here’s what the simple linear relationships among all those variables look like. Apologies for the complicated graphic, but this is a complex data set.

Linear relationships (upper triangle) and correlation coefficients (lower triangle) among variables from the Swiss Statistical Encyclopedia. Grapic by jby.

In the upper triangle of this matrix, you can see scatter plots with linear regression lines estimated from the data. Regression lines are colored according to statistical significance, corrected for multiple testing: red lines are “very” significant, orange just significant; grey lines indicate relationships no stronger than expected by chance. The bottom triangle gives the raw correlation coefficient between the variables, on a scale where 1 means a perfect relationship and 0 means no relationship.

What you should notice first is that top row of scatterplots, which show that crime rates have strong linear relationships with every other variable in the dataset, from population size to mass transit use. But that makes a certain amount of sense—all these variables are interrelated. Larger communities tend to attract more immigrants and tend to have better public transit systems that support more use. Communities with more unemployed people might have higher mass transit use, since cars are expensive. So, lots of correlation—but is there any causation in there?

There are a number of ways to tackle that question. A relatively easy one is to use multiple regression and a “model comparison” approach. This essentially builds a statistical model in which multiple variables—population, foreign residents, unemployment, mass transit use—are used to predict a single variable, crime rates. The procedure then compares the model’s AIC score, an index of the model’s ability to predict crime rates from the other variables, to models with each of the individual variables removed. If removing a variable makes a “significant” reduction in AIC—which is typically understood to be a difference of at least 2 AIC points, then that variable contributes significantly to predicting crime rates.

A Swiss public transit police car. Photo by Kecko.

It turns out that all the variables I considered make a significant difference in a multiple linear regression model trying to predict Swiss crime rates. But they aren’t equally important. Removing unemployment from consideration made a difference of 4.9 AIC points, removing the percentage of foreigners made a difference of 5.9, and removing the percentage of people using mass transit made a difference of 13.6. But removing the number of citizens made a difference of 92.9 points—an order of magnitude bigger difference than the other variables.

So it looks like the strongest pattern in Kümmerli’s data is just the effect of larger communities—they have more crime.

This is not what we scientists call a “surprise.”

Moreover, it’s not particularly informative for the purpose of the question Kümmerli sets out to answer—we don’t really know how population size actually relates to humans’ tendency to be less “cooperative,” or to need police to make them cooperative. Larger population does seem to be related to more crime, but it’s also related to more mass transit use—and mass transit use strikes me as a pretty cooperative behavior.

Admittedly, that’s a pretty off-the-cuff assessment based on a couple hours of fiddling around with simple statistical analysis of an easy-to-access public data set. But I strongly suspect that you could say exactly the same thing of Kümmerli’s paper. ◼

Reference

Kümmerli, R. (2011). A test of evolutionary policing theory with data from human societies. PLoS ONE, 6 (9) DOI: 10.1371/journal.pone.0024350

Science online, Easter Island sustainability edition

Easter Island. Photo by vtveen.
  • Easter Island is no Greenland. The collapse of Polynesian society on Easter Island may not have been due to ecological damage, but a terminal case of Europeans.
  • Angry Birds can’t do that. Players of an online game have resolved the structure of a key HIV protein.
  • The kids are all right. David Dobbs draws together emerging research on the brains of teenagers.
  • You’re running late. But so is everyone else. Our perception of the present is really a remembrance of the immediate past.
  • Fortunately, I hear that the honey badger doesn’t care. The popular idea that honey guide birds lead honey badgers to beehives is probably a myth.
  • Hold your horses, Jean-Baptiste. Heritable epigenetic changes to gene expression may not have much impact over evolutionary time.
  • Predator becomes prey. Ground beetle larvae prey on much larger frogs and toads by luring them in for an attack.

And finally, via SciAm, the peacock spider. Check out that thorax!


 ◼