The Qu’osby Show

Every time I start to think The Daily Show might be losing its edge (admittedly, this usually happens whenever the show goes on hiatus for a couple weeks) along comes something like this: Aasif Mandvi’s take on the Cosby Show. Wow.

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Science online, louse-y Valentine’s Day edition

A human head louse. Photo by Giles San Martin.

You like D&T, you like it not …

Principle interviewee: Erica Bree Rosenblum

This post was chosen as an Editor's Selection for ResearchBlogging.orgSince her office is just down the hall from mine, I couldn’t very well write about Erica Bree Rosenblum’s latest scientific paper without talking to her about it in person. Rosenblum and her coauthor Luke Harmon weave together the stories of three lizard species’ evolutionary responses to the gypsum dunes of White Sands, New Mexico. As Rosenblum told me in our interview, the study both consummates work she began as a doctoral student and suggests new avenues of study at a striking and beautiful field site.

Erica Bree Rosenblum at White Sands, where she has studied lizards’ adaptation to the dramatic gypsum dunes since graduate school. Photo courtesy Erica Bree Rosenblum.

(I’ve edited the transcribed interview for clarity and length, and paraphrased the questions I asked in person to minimize my interruptions. Rosenblum previewed, corrected, and approved the text of her answers and my questions as they appear below.)

Jeremy B. Yoder: Tell me about the new study and its context.

Erica Bree Rosenblum: Some of the things that are compelling about White Sands that motivated us to write the “Same Same but Different” [$a] are that there are a number of different species that colonized this recent formation. … At first blush, this system looks all “same same.” You look at the main trait that has allowed these animals to survive there, which is becoming light in color, and many diurnal animals at White Sands are white, unless they have some other strategy for avoiding predation. … So a lot of my work over the last several years has been focused on the “same same” aspect of convergent evolution and on the one trait that appears to be the key trait for colonizing, which is light color.

The motivation of this paper was that there is an enormous “but different” side to the story, because there are three lizard species there, and they exhibit some really compelling differences in their degree of adaptation and their progress toward speciation. And also if you start looking at other traits besides color, if you take a multidimensional perspective on adaptation, then there are a lot of really striking differences across species.

JBY: Body size and limb length?

EBR: Body size and limb length and also the genetic basis of color and how structured the populations are across the ecotone. [The transition zone between white sand dunes and dark soil – JBY] So the motivation for this study was to look at what are the essential factors for ecological speciation and then what are the promoting factors for ecological speciation and how might the three species differ.

JBY: How did you start studying the White Sands lizards in the first place?

EBR: I was co-advised in graduate school by two eminent evolutionary biologists who have opposite perspectives on how you find study systems. My first year in graduate school, my one advisor, Craig Moritz, said to pick the theory you are interested in first and then find the system that will let you address that theory. My other advisor, David Wake, said to pick something that you love aesthetically, and then learn more about that. So I had these competing influences, in that sense, when I was trying to form my dissertation project.

Rosenblum and her collaborator Luke Harmon pursue Sceloporus magister, a close evolutionary relative of one species that has colonized White Sands. Photo courtesy Erica Bree Rosenblum.

I had just come back from a bunch of years abroad, and I knew I didn’t want to do research overseas. I also knew that I wanted to do my own thing and just “plug into” a system that had already been established. So I had an idea for wanting to do a study about ecotones—to study divergence with gene flow—in herps. [Lizards and snakes – JBY]

I had talked with different people and taken a map of the U.S. and circled every place that had really sharp transition zones that had to do with interesting problems in herpetology. So I had considered other field sites—in some of the lava flows in California that have strong transition zones, coastal-to-inland [transitions], these cool legless lizards in California—there’s a bunch of strong ecotonal transitions in western U.S. reptiles.

So I circled a bunch of places on the map and I was driving around catching animals and thinking about what I wanted to do. And when I got to White Sands, the Dave Wake part of me was drawn to it aesthetically. … It just seemed like such a striking example of adaptation with such clear possibilities. I knew I wanted to study something simple enough to wrap my head around, and White Sands has a striking, small, depauperate community, so you can actually study everything. And with a few exceptions, no one had done any biological research at White Sands since the forties, when the White Sands species were described.

JBY: What question would you like to have answered five years from now?

EBR: One of the big things I’d like to know is about the dimensionality of selection in the wild. We have a tendency to think about whatever trait seems most accessible to us, but when environments change, organisms are confronted with a lot of adaptive problems to solve at once.

… Number one is understanding the genetic architecture of adaptation and speciation. We know a lot about genotype to phenotype connections in natural populations, but we don’t know a lot about genotype-to-phenotype-to-speciation connections. I’m really interested in traits that might function as “magic traits,” that make speciation easier. I’m interested in whether [for White Sands lizards] color serves as a magic trait and can “high-tail” populations towards speciation.

The other thing I’m interested in is the genetic architecture of multidimensional adaptation. If you have lots of traits that are changing in a new environment, and it is happening very quickly over time, are the genes that underlie those adaptive traits all clustered in the genome? Is there a “signature” of multidimensional adaptation at the genetic level?

And then the third thing is about the predictability of evolution in general. I think it would be really fun to do a more systematic study of the entire fauna at White Sands and understand not just three lizard replicates but all the other species that are white, from invertebrates to mammals, to understand how predictable those adaptive changes are.

Different shades of Sceloporus undulatus, one of the three lizard species adapted to life at White Sands. Photo courtesy Simone Des Roches.

JBY: What about ten years from now?

EBR: The challenge of working at White Sands is that it’s a compelling empirical system to test some classic population genetics ideas, but it’s very hard to develop general conclusions from one system with three replicates. It’s nice to have the three lizard replicates, but it’s still only one system in one place. I’ve tried to visit all the other gypsum sand dune systems in the world. There are others—in Texas, in Mexico … they have unique faunas in other ways, but none of them seem to have blanched species. So when you study natural systems, finding compelling evolutionary replicates can be difficult.

JBY: And when we go looking for study systems we often find the ones with the strongest signals first.

EBR: That’s right … Another example where we’re running into a problem is that … in two of the three species the gene that controls color is the same gene, but has different dominance patterns [PDF]. In one species the mutation that leads to white color is recessive and in the other it’s dominant. And there’s a longstanding debate from Haldane, of how dominance should influence adaptation, but it’s just an N of two. So we could get any pattern. We’re doing follow-up studies to see if the predictions would be upheld in terms of how dominance affects the rate at which adaptive alleles are fixed, and visibility to selection. But whichever way the story goes, it’s either the way you expect it or the way you don’t expect it, but it’s just two replicates. So that is one challenge of studying things in nature.

JBY: Let’s conclude with an outrageous, blog-oriented question: Is White Sands the new Galapagos Islands?

EBR: Yes. [Laughs]

JBY: That’s what I hoped you’d say.

EBR: There are things that are compelling about white sands not only for learning about evolution but also for teaching about evolution. One of the new grants I have is for integrating research and outreach there, because it’s such a compelling place to say, “this is how adaptation happens.” You can see it with your eye, and it’s exactly what you expect. We just finished helping build a new evolution museum at the visitor center at white sands. … So I think that it has cool potential for helping public education around evolution, and it’s not as expensive to go there as it is to go to the Galapagos!

References

Rosenblum, E., Rompler, H., Schoneberg, T., & Hoekstra, H. (2009). Molecular and functional basis of phenotypic convergence in white lizards at White Sands. Proc. Nat. Acad. Sci. USA, 107 (5), 2113-7 DOI: 10.1073/pnas.0911042107

Rosenblum, E., & Harmon, L. (2010). “Same same but different”: Replicated ecological speciation at White Sands. Evolution DOI: 10.1111/j.1558-5646.2010.01190.x

“Going Viral” for HIV awareness

My friend Luke Swenson has just started a blog for the Vancouver, BC-based HIV awareness organization YouthCo. Luke’s working on a Ph.D. in HIV’s evolutionary response to drug treatment at the British Columbia Centre for Excellence in HIV/AIDS, and he’ll be using the blog to explain new scientific results and how they relate to treatment and prevention strategies.

His inaugural post discusses the German AIDS patient who was recently confirmed to have been cured by a bone marrow transplant—it’s pretty clear that this cure comes at a steep price. (Full disclosure: Luke asked me for comments on an earlier draft of the post.) Go check it out and welcome Luke to the science blogosphere!

For lizards on white sands, evolution doesn’t quite repeat itself, but it does rhyme

ResearchBlogging.orgSee also my interview with Erica Bree Rosenblum, the lead author of the study discussed here.

If life on Earth started over from scratch, would it eventually re-evolve the world we see today? This is the kind of question that makes for an entertaining argument over beers: “Well, without the Chicxulub impact, the dinosaurs wouldn’t have gotten out of the way for mammals.” “But dinosaurs were already turning into birds!” You might think that to resolve that argument, we’d need a second Earth and four billion years of research funding. And maybe we would, to resolve it conclusively. But sometimes nature performs a small-scale version of that kind of experiment for us.

The gypsum sand dunes of White Sands, New Mexico. Photo by Fabian A.M.

One such natural experiment is at a special site in the New Mexico desert, a patch of gypsum sand dunes called White Sands. As my University of Idaho colleagues Erica Bree Rosenblum and Luke Harmon show in a paper just released online ahead of print by the journal Evolution, three species of lizards that colonized White Sands are following the same evolutionary path, but in different ways and at different paces [$a]. In the words of a Thai expression Rosenblum and Harmon choose to describe their thesis, the three lizards are “same same but different.”

Continue reading

Happy Darwin Day!

The co-discoverer of natural selection and author of The Origin of Species was born 202 years ago today. Nerdy festivities are in the offing everywhere, even Moscow, Idaho.

To assist in your festivities, allow me to suggest my postings for Darwin’s 200th (I’m not so down with the Christianity these days, but I still stand by the points made) and the New York Times‘s great annotated copy of the Origin. You could also check out this interview with evolutionary biologist David Rezick, who has written his own annotated version of The Origin.

Charles Darwin, born 12 February, 1809. Image via Pharyngula.

Science online, bright and beautiful edition

Beep-beep. Photo by jafro77.

So, um … have you “liked” Denim and Tweed on Facebook yet? I’m sure you meant to. I bet you were just busy with other stuff, earlier.

  • Run, run, as fast as you can … For small ground birds like ptarmigans, the energetic cost of running decreases as they go faster.
  • Declining effect. Ecologists really shouldn’t be all that surprised, or worried, about the “decline effect”.
  • Skin guns don’t heal people. Doctors with skin guns heal people. A new “skin gun” can heal second-degree burns by spraying them with stem cells.
  • Microscopic foraminifera know more than you might think. The history of a warming Northwest Passage is encoded in plankton.
  • Ants are total mutualism sluts. Microbes living on leafcutter ants generate antibiotics that may help fight bacterial infections of the ants’ fungus gardens.
  • Harder than it sounds. Science educators need to know when, and how, to say, “I don’t know.”
  • Is that a just-so story in your pocket, or are you just happy to see me? Scicurious and A Primate of Modern Aspect consider adaptive explanations for the shape of the human penis.

Video this week, via Thoughts from Kansas: a Sunday School song for the combative biologist. (See also Eric Idle’s classic “All Things Dull and Ugly”.)

Is dilution the solution to information pollution?

ResearchBlogging.orgChris Smith, my good friend and longtime collaborator on all things relating to Joshua trees, pulled into the gas station well after dark. He was on his way back to our field site in the Nevada desert, and this was the last stop before cell phone signals disappeared for good and you had watch the highway ahead for free-range cattle.

It was also the last stop for fresh water, gasoline, and propane. Chris fueled up the van, then went inside for help refilling the spare propane tank. The unshaven, sun-darkened night clerk gave Chris’s flip-flops and tee shirt a sidelong look—they might’ve been perfect back in Vegas around midday, but now it was a freezing high desert night. Clearly unpleased to have to go outside himself, the clerk zipped up his parka and followed Chris out to fill up the tank.

Why do scorpions fluoresce under UV light, anyway? Photo by Furryscaly.

Refilling the propane tank entailed much adjusting of valves and connecting of pipes, which the clerk accomplished with a large wrench. Somewhere a valve misconnected to a pipe, and Chris’s jeans were suddenly soaked in liquid propane. The clerk swore elaborately at the valve, blamed the lazy bastards on the day shift, and took out his frustration on the propane tank with the wrench.

When this miraculously failed to engulf the two of them in fiery death, the clerk straightened out the connection and started filling the spare tank, then turned to Chris and said, “So what’re you doing out here, anyway?”

Evolutionary biologists learn to be vague about their profession in rural areas, so Chris said he was a biologist. No, he wasn’t working for the Air Force base over at Groom Lake. He was studying Joshua trees.

“You must know something about evolution, right?” said the clerk. “I’ve got a question for you.”

Oh, brother, thought Chris. Here we go. How long till this tank fills up?

“You know how scorpions glow under ultraviolet light,” they clerk asked.

Why yes, I do, said Chris.

“How come? I mean, what possible adaptive value does that have?”

Well, you know, said Chris, I don’t have any idea.

“I hear,” said the clerk, “that fossil scorpions millions of years old will glow if you shine a UV light on them. That’s pretty wild, isn’t it?”

You’re right, said Chris. That’s pretty wild.

Chris told this story to everyone else in the field team as soon as he got back to camp, and I think it’s a great illustration of two points that inform the way I think about science blogging. First, that scientists are maybe a bit quick to assume hostility in their audience; and second, that telling cool stories about the natural world is at least as important as confronting the hostility really is out there.

I’ve been thinking about these points ever since ScienceOnline 2011, which I finished with the “Defending Science Online” session, a discussion of strategies for countering all manner of anti-scientific bunk: climate change denialism, opposition to vaccination, creationism, homeopathy. The panelists discussed specific events and general strategies, but they really only discussed confrontation. I left with the nagging feeling that identifying and refuting non-science, however well it’s done, isn’t enough.

Scientific misinformation needs to be contained, but it also needs to be diluted. Photo by kk+.

The trouble with refutation is that once creationists or anti-vaxxers piss in the information pool, it’s nearly impossible to clean up the water. A widely-cited recent study of fact-checking in news articles has shown that corrections often fail to reach people who don’t want to hear them—and the act of correcting a misperception can actually reinforce it [PDF]. Other works shows that even when you convince people that the information they cite in support of political positions is wrong, they hold on to those positions [PDF].

When real-world pollution can’t be extracted from the environment, there’s one final line of attack: dilute it. In the sense that what we call pollution is often a dangerous artificial concentration of some substance that is non-dangerous at much lower, natural levels—carbon dioxide, for instance—the solution to pollution is, indeed, dilution. In the case of information pollution, which we can’t really prevent or contain, we can dilute non-science with, yes, science.

In other words, the best weapon against denialism may not be explicit takedowns of denialism, but good, clear, accessible discussion of science and all the ways it’s awesome. I can speak to this from my own experience growing up in a neutral-on-evolution household in the midst of quite a lot of creationists. I can’t recall that I ever decided evolution was a historical fact because of something I read against creationism. Instead, I came to accept the fact of evolution because I read and watched and listened to a lot of popular science—National Geographic, Ranger Rick, and Nature on PBS—that just took evolution as a given, and showed how it explained the world.

So, while folks like PZ Meyers, NCSE, and Ben Goldacre fight the good fight, I think we shouldn’t forget the value of celebrating science without making it a confrontation. And in the era of Science Online, we’re surrounded by people pointing out things as cool as glow-in-the-dark scorpions. See Scicurious’s Friday Weird science posts, Carl Zimmer’s tale of Vladimir Nabokov’s contributions to entomology, Olivia Judson explaining brood parasitism, or Radiolab’s mind-blowing meditation on stochasticity for just a few great examples selected off the top of my head.

This kind of science communication focuses on the grandeur and fun of the scientific view of life, and it wins supporters to science one story at a time. That’s not necessarily the most exciting part of the struggle against ignorance and denialism. But every time we get someone to say, “That’s pretty wild,” we’re making progress.

References

Bullock, J. (2006). Partisanship and the enduring effects of false political information. Presented at the annual meeting of the Midwest Political Science Association. PDF.

Nyhan, B., & Reifler, J. (2010). When corrections fail: The persistence of political misperceptions. Political Behavior, 32 (2), 303-30 DOI: 10.1007/s11109-010-9112-2

If you like D&T, you can now “like” D&T

In another round of neurotic revisionism, I’m taking Denim and Tweed to full Facebook. That means this blog now has a Facebook fan page, and a new widget placed prominently in the sidebar. This makes three box-of-faces widgets in the D&T sidebar, and that’s frankly too many. So I’ll be phasing out both the Blogger and NetworkedBlogs boxes in about a month from today. (You can still follow D&T through those systems, your followership just won’t be recorded in the sidebar.) Sorry! My aim is to make this the last such rejiggering for the long term.

Science online, light fantastic edition

  • The poetic possibilities alone are staggering. Given a wing with the right optical properties, it’s possible to fly on a beam of light.
  • Which is why I buy in bulk. Serving snacks in smaller packages can help people eat less—but it only works for overweight people.
  • “Digital rectal stimulation.” Really. Science finds a cure for intractable hiccups.
  • Being female ≠ being anemic. Normal blood loss during menstruation does not cause iron deficiency.
  • Two million years of eating bamboo. Although fossils of the giant panda’s ancestors are few and far between, paleontologists are beginning to piece together their evolutionary history.
  • Context! Ed Yong compiles five years of stem cell research into an interactive timeline.
  • Boy, is my face red. How did blushing evolve as an involuntary social signal?

And now, Nature Video explains a new study [$a] that suggests why seahorses are horse-shaped. Via The Hairpin.