Blogging the white sands

While out of town for Science Online, I got word of a new blog worth following – two other University of Idaho doctoral students, Simone DesRoches and Kayla Hardwick, have started writing about a self-directed course they’ve set up at The Evolutionary Ecology of White Sands, NM.

Simone and Kayla will be reading three classic evolutionary ecology texts, Dolph Schluter’s Ecology of Adaptive Radiation, Jerry Coyne and Alan Orr’s Speciation, and Robert MacArthur’s Geographical Ecology, and discussing them in the context of their research on the lizards of White Sands, New Mexico. Three distantly related species have all evolved white coloration after colonizing a region of white gypsum sands, each via a different genetic mechanism. (For more details, see Ed Yong’s excellent recent article about the White Sands lizards.) It’s a fascinating system, and the three books should make a great jumping-off point for discussing what’s known about it and what’s yet to be learned.


The white sands. Photo by Fabian A.M.

Research Blogging Awards 2010

Research Blogging Awards 2010On the heels of Science Online 2010, the ResearchBlogging.org community has announced the Research Blogging Awards, honoring online writing about peer reviewed research in a wide range of categories. Nominations are open until 11 February, and can be submitted by anyone; a panel of judges will select 5 to 10 finalists from nominees in each category, and winners will be selected by a vote of the RB.org membership.

#scio10 day three: In which the discussion of online civility remains (almost) entirely civil

Sunday morning, the final sessions of Science Online 2010 seemed almost planned to tie together the broad theme of the conference – how best to connect science (and working scientists) with the rest of society.

Broader impact done right: A heavily marine-themed panel – Karen James of the Beagle Project, Deep Sea blogger Kevin Zelnio, Miriam Goldstein of the Oyster’s Garter, the New England Aquarium’s Jeff Ives and NASA’s Beth Beck – discussed a wide range of science outreach options available, mostly from the perspective of working scientists.

A consensus emerged that good outreach, of which online resources are now usually a part, is essential to basic research, and will be increasingly important in obtaining funding. Funnily enough, my collaborator Chris Smith had just e-mailed me about the possibility of bringing a satellite broadband connection with us for the upcoming field season – maybe we’ll be live-blogging Joshua tree research this year.

Article-level metrics: Peter Binfield, the managing editor of PLoS ONE, discussed the ways in which PLoS is now measuring the impact of individual articles published through its online, open-access journals – not just citation counts, but also pageviews, PDF download rates, and the recent collaboration with ResearchBlogging.org to track blog coverage. It’s clear that research articles aren’t going to be judged by the impact factor of their containing journals anymore, now that you get a citation count with every Google Scholar search, and it’ll be interesting to see what scheme emerges as global standard for article-level impact.

Online civility: Science bloggers Janet “Dr. Freeride” Stemwedel, Sheril Kirshenbaum, and the pseudonomous Dr. Isis led discussion about what constitutes civil behavior in an online setting – and the conversation turned into something of an object lesson, as disagreement over the meaning of civility itself turned, well, very nearly un-civil. The panel did, I thought, an admirable job demonstrating in “real life” the skills necessary for online moderation of touchy discussions.

I wouldn’t say there was consensus, but the room did seem to come together around the ideas that communities define their own standards of civility, that those very standards can make it difficult to express minority or dissenting points of view, and that (judicious) incivility can be useful for minorities trying to be heard. Dave Munger made that last point, and I hope my paraphrase does it justice – I think it’s an important one. Certainly it’s the case that sexual minorities have been (and still are – I’m looking at you, Mennonite Church USA) told that merely acknowledging our existence and discussing our perspective is a violation of civility, inasmuch as “civil” is equivalent to “suitable for general audiences.” It was a great discussion, and I’m still processing it – it might be worth a dedicated post in the near future.

So now I’m sitting in the Raleigh-Durham airport, writing up the weekend over dodgy, overpriced WiFi – I’ve been badly spoiled by SignalShare’s fantastic service. Many, many thanks to organizers Bora Zivkovic and Anton Zuiker, and to the sponsors, who put on a fantastic conference – and especially to NESCent, who made it possible for me to attend. It was a great time!

#scio10 day two: In which the discussion turns to duck genitalia within the second session

Science Online is not like the Evolution meetings. This was evident in the first session I entered, where the plastic click of laptop keys underlay the conversation between the panelists and the audience. Twitter was a second venue for discussion the whole conference, and you could track audience interest in a given session purely from posts with the #scio10 hashtag. Notes on the sessions I attended:

  • From blog to book: Tom Levenson, Brian Switek, and Rebecca Skloot discussed the usefulness of blogging for authors and developing authors, mostly as a venue for promoting books, but also as a space for developing ideas and writing to develop a book.
  • Rebooting science journalism: Ed Yong, Carl Zimmer, John Timmer, and David Dobbs led discussion about the future of science journalism online, with emphasis on unique ways to connect the diverse and Balkanized interest groups of the web to science news, and an extensive aside on the recently discovered role of sexual selection in the morphology of ducks’ penises and vaginas – Carl wasn’t able to publish much detail via a print magazine, but (perhaps unsurprisingly) the story proved popular online. This set off a flurry of interest in the article in question, and revealed I’m not the only one who thought this phenomenon makes limerick fodder.
  • Demonstrations of a new German science magazine for children, an online hub for New Zealand-centric science reporting, use of Second Life as a science education resource, and the Open Dinosaur Project. I wasn’t strongly impressed by the Second Life presentation – I don’t see the usefulness of the 3-d environment over conventional instant messaging. On the other hand, Andy Farke’s Open Dinosaur Project is doing amazing things with a bunch of volunteer “citizen scientists” assembling a morphological data from the literature. It’s a new model for digging data out of old publications, and it’s not hard to think of other projects that could benefit from a similar approach.
  • An open history of science: John McKay and Eric Michael Johnson discussed the history of media employed in scientific societies. Turns out that Enlightenment-era scientists corresponding by mail, the informal science societies they formed, and the journals they compiled from each others’ letters were more like the modern blogosphere than you might think.
  • Online reference managers: representatives from Citeulike, Mendeley, Zotero, and Scopus talked about their various products’ approaches to organize researchers’ electronic reference libraries, and to use personal contacts and library content to recommend new material. There’s some interesting possibilities – enough that I’ve downloaded Mendeley (the only one, so far as I could tell, that has a locally-installed client) to play around with for a bit. I’d love to ditch EndNote, if I can extract my thousands of references and linked files without too much bother.

The day concluded with a banquet at the hotel, capped by a series of brief “ignite” talks on everything from the benefits of blogging while working toward tenure to a crowd-sourced project to check the accuracy of chemistry information in online sources.

Here’s a slideshow of photos uploaded to Flickr with the #scio10 tag, mostly from Saturday if I’m not mistaken.

Science online, fried couch potato edition


Photo by Kevin Steele.

Yes, I’m presently at Science Online 2010, but there’s no rest for the Interwebs.

  • Kill your TV, before it kills you: Watching more than an hour of television a day may counteract the benefits of regular exercise. (Dave Munger at SEED)
  • Divorce rates are higher in states with same-sex marriage bans. Correlation, or causation? “It could be that voters who have more marital problems of their own are more inclined to deny the right of marriage to same-sex couples.” (FiveThirtyEight.com)
  • Artificial selection of food plants doesn’t reduce their genetic diversity, it turns out. (Agricultural Biodiversity Weblog)
  • Prairie dogs help prevent invasive plants from invading. (Conservation Magazine)
  • Circumcision changes the bacterial community of the penis – and reduces the presence of species that can cause bacterial vaginosis. (Mike the Mad Biologist)
  • The evolution of avian influenza depends more on local dynamics than on long-distance migration events. (Mystery Rays from Outer Space)
  • Farmed salmon released in Scotland swim for Norway. (Conservation Maven)
  • In Fiji, tilapia escaped from fish farms are probably preying on native fish. (Observations of a Nerd)

And, finally, via kottke, beautiful footage paired with unsettling statistics.

Why make your own food when it doesn’t pay?

ResearchBlogging.orgWe humans like to think we’re pretty complex – what with having invented the wheel, wars, New York, and so on – so we tend to forget that evolution doesn’t care about complexity. All that matters to natural selection is who makes the most babies, and sometimes complex adaptations can get in the way of that criterion. A study recently published on the always open-access PLoS ONE provides a good example of this principle in action – given the right selective pressures, photosynthetic organisms will give up on the whole photosynthesis thing.



Tiny Indianpipe (Monotropa) and giant Rafflesia, two plants that gave up photosynthesis. Photos by Bemep and Tamara van Molken.

Photosynthesis is clearly a complex adaptation, requiring specialized cellular structures and biochemical processes that can use light to power the synthesis of sugars. Complex enough for a whole additional organism, in fact, since the chloroplast, the cellular structure in which most eukaryotes conduct photosynthesis, probably originated as a symbiont that never left its host cell [$a]. (In some organisms, this process of becoming photosynthetic is still underway.) There are clear advantages to the ability to make your own food conferred by photosynthesis. Yet there are numerous examples of non-photosynthetic organisms with photosynthetic ancestors. For instance, plants as varied as the big, exotic Rafflesia or Monotropa, whose small white flowers are easy to spot in North American woods, have inactive chloroplasts and parasitize other plants. These cases are good reason to think that there may be selective conditions in which the cost of maintaining the mechanisms of photosynthesis outweighs the benefit of independent food production.

The new paper describes just such a set of selective conditions. The authors build a mathematical model of competition between microorganisms, such as flagellates, that can either be mixotrophs, able to conduct photosynthesis or capture prey to feed themselves, or heterotrophs, only able to sustain themselves by eating other critters. The model’s result hinges on two key facts of life for single-celled predators: (1) it turns out that the size of a flagellate cell determines what size of prey it is best able to capture [$a]; and (2) chloroplasts take up space in a cell, limiting the evolution of cell size.

The relative advantage of retaining photosynthesis, then, is directly related to the size range of available prey. Mixotrophs, whose cells are big enough to accommodate chloroplasts, are most efficient predators of larger prey; with no chloroplasts, heterotrophs can be small enough to take advantage of smaller prey. The question of which form wins out, then, relies on the distribution of available prey sizes and the light environment. If there’s lots of light for photosynthesis, mixotrophs can out-compete heterotrophs even if they don’t hunt very efficiently; but if there’s not much light and mostly small prey, the more efficient heterotrophs win.

The fact is, it’s rare for any given adaptation to be useful under all possible conditions. Biological structures or metabolic processes that become disused are no longer under selection for efficient performance of their original function – they are free to accumulate mutations that may make them degenerate into uselessness, or to be co-opted for entirely new functions. But if an adaptation is actually costly to maintain, then natural selection may eradicate it altogether.

References

de Castro, F., Gaedke, U., & Boenigk, J. (2009). Reverse evolution: Driving forces behind the loss of acquired photosynthetic traits. PLoS ONE, 4 (12) DOI: 10.1371/journal.pone.0008465

Hansen, B., P. K. Bjornsen, & P. J. Hansen (1994). The size ratio between planktonic predators and their prey.
Limnology and Oceanography, 39, 395-403

McFadden, G. (2001). Chloroplast origin and integration Plant Physiology, 125 (1), 50-3 DOI: 10.1104/pp.125.1.50

Science online, stuck in the Felsenstein Zone edition


Gray crowned rosy-finch. Photo by jroldenettel.
  • Bayesian methods for reconstructing evolutionary relationships between species may be susceptible to errors created by long branch attraction – one of the problems they were supposed to solve. (dechronization)
  • When introduced trout compete for food with gray-crowned rosy-finches, the rosyfinches lose. (Conservation Maven)
  • The success of an invasive plant depends on the kind of habitat it’s invading, and how that habitat is managed by humans. (The EEB & flow)
  • New fossils are the earliest-known vertebrate footprints on land – 395 million years old. (Not Exactly Rocket Science, Laelaps, Pharyngula, and Palaeoblog)
  • Give a meteorologist a green screen, and he’ll tell you tomorrow’s forecast. Give a meteorologist professional certification, and he’ll tell you that climate change is a hoax. (Columbia Journalism Review)

Masquerading caterpillars hide in plain sight

ResearchBlogging.orgInsects that have evolved elaborate mimicry of inanimate objects – leaves, twigs, even bird droppings – to hide from predators are a staple of nature documentaries. But do these masquerades work because they help insects blend into the background, or because predators actually see the insects and then dismiss them as inedible leaves, twigs, or bird droppings? It’s a tricky question to answer, but a brief paper in this week’s Science presents an experiment that tries to do just that [$a].

The paper’s authors reasoned that if mimicry-based camouflage works through disguise rather than invisibility, a predator’s experience might determine their response to mimic camouflage. They trained three experimental groups of young domestic chicks by introducing them into trial arenas containing either natural hawthorn branches, empty arenas, or hawthorn branches wrapped in purple thread. The wrapped branches were used to test whether the chicks would be more or less likely to attack something twig-like but differently colored (though this is only clear from the supplementary online material).


Larva of the brimstone moth Opisthograptis luteolata, looking distinctly twig-like. Photo by Michael E. Talbot.

The authors then presented chicks from each “training” group with either one of two species of hawthorn-twig-mimicking moth larvae (the brimstone moth, or the early thorn moth), or a hawthorn twig about the size of a caterpillar. Chicks that had previously encountered natural twigs waited longer to attack the caterpillars than chicks that hadn’t previously seen twigs, or that saw the colored hawthorn branches. So, apparently, the chicks were reasoning (inasmuch as chicks reason) that the twig-like object in front of them was the same as the inedible twigs they had tried before.

This is an elegant experimental test of the effect of mimicry as mimicry – what the authors propose to call camouflage by “masquerade.” However, it doesn’t actually show that what the authors term camouflage by crypsis – blending into the background – isn’t also contributing to the benefits that these caterpillars receive from their unique shape and coloration. There’s no reason to think that twig-shaped caterpillars can’t benefit in both ways, by being less visible in the first place, and then easily mistaken for a twig if they are seen.

In conclusion, here’s some video footage of another natural mimic, the leaf insect.

Reference

Skelhorn, J., Rowland, H., Speed, M., & Ruxton, G. (2010). Masquerade: Camouflage without crypsis Science, 327 (5961), 51 DOI: 10.1126/science.1181931

Science online, disappearing sea lions edition


Gone for good, or just for lunch? Photo by Leo Reynolds.

Happy New Year! In case it wasn’t previously obvious that I write these posts in advance, here’s the proof.

  • In ant-plant relationships, plants seem to be in charge: they cheat! (Thomas’s Plant-Related Blog)
  • Bats eat mosquitoes – but do they control mosquito populations? (Cheshire)
  • The sea lions of San Francisco’s Pier 39 have abandoned their post, for no readily apparent reason. No word on whether anyone has found a note reading “So long, and thanks for all the fish,” but plans to commemorate the 20th anniversary of the sea lions’ arrival this January are in question (Wired Science and NY Times)
  • Good news: a new long-term study confirms that creating marine protected areas allows overfished ecosystems to recover. Bad news: marine protected areas are more likely to be set up in areas that aren’t very economically important. (Conservation Maven)
  • After colonizing a region with brilliant white, gypsum sands, three different desert lizard species evolved white skin – but each species evolved a different genetic mechanism to do so. (Not Exactly Rocket Science)
  • A bat was found in France carrying the same fungus that seems to be killing bat colonies across eastern North America – but only one bat, and it seems to be healthy. (Effect Measure)

Science blogging, doubtfully venomous dinosaurs edition

Happy Christmas! I’m with family for the holidays, but still spending too much time online.


Photo by Erik K Veland.
  • Scientists propose to sequence genomes from 10,000 vertebrate species, sampling almost every vertebrate genus (Dechronization)
  • A feathered dinosaur related to Velociraptor has tooth and skull traits that suggest it was venomous – or do they? (Brian Switek at Smithsonian)
  • Recalibrating estimates of “background” extinction implicates humans in the disappearance of North America’s ancient mammals (Ecographica)
  • The adorable proportions of koala skulls might be the result of selection for both strong jaw muscles and sensitive ears. (Wired Science)
  • Male ducks have baroque, convoluted penises, probably because of sexual selection imposed by female ducks’ baroque, convoluted vaginas. (Wired Science, Ecographica, and A DC Bird Blog so far … this is bigger than fruitbat fellatio!)

That last one is probably as good an excuse as any to post the limerick with which I took second place in a department contest for Darwin’s 200th birthday:

A biologist, whom we’ll call Chuck
Said, “Regard, if you will, this poor duck –
“I blame sexual selection
“For his corkscrew erection,
“Since it must make it tricky to …
fly.”