Wikitruth

Everybody uses Wikipedia these days. I go to the site at least once daily to find everything from the formula for great circle distance to the difference between gram-negative and gram-positive bacteria. Simson Garfinkel says Wiki-memory informs more than my half-arsed TA lectures and frantic data-crunching.

Wikipedia’s standards of inclusion–what’s in and what’s not–affect the work of journalists, who routinely read Wikipedia articles and then repeat the wikiclaims as “background” without bothering to cite them. These standards affect students, whose research on many topics starts (and often ends) with Wikipedia. And since I used Wikipedia to research large parts of this article, these standards are affecting you, dear reader, at this very moment.

And, he argues, that’s a very scary thing. Because Wikitruth is not the same as factual truth:

What makes a fact or statement fit for inclusion is that it appeared in some other publication–ideally, one that is in English and is available free online. “The threshold for inclusion in Wikipedia is verifiability, not truth,” states Wikipedia’s official policy on the subject.

This is a huge problem in light of the fact that many of the top peer-reviewed journals still haven’t gone open-source – you can usually link to an online abstract these days, but the text of articles is behind a subscription wall. And so a lot of science might as well not exist, as far as Wikitruth is concerned.

Yet the need to define truth in terms of third-party publications arises directly from Wikipedia’s crowdsourced model – authors are unverifiable, so the facts have to be based in something other than personal expertise. Google tried to get around this with the personality-driven Knol, but that’s not exactly taken off.

Via Andrew Sullivan.

Double century

This very post is my 200th on D&T. There are a lot of ways I could mark this milestone in my online time-wasting, but I think probably the best is with a photo of a Western Scrub Jay atop my favorite spiky desert plant.


Photo by me.

Copland rocks

Alex Ross reveals that Queen’s “We Will Rock You” is derived from Aaron Copland’s Fanfare for the Common Man. With side-by-side audio samples.

Towards an empirical morality

ResearchBlogging.orgAndrew Sullivan links to a thought-provoking 1998 essay by E.O. Wilson, in which the champion of sociobiology delves into the question of whether morality arises from divine revelation or natural selection. Wilson takes an interesting position, attempting to turn the question around by ninety degrees:

But the split is not, as popularly supposed, between religious believers and secularists. It is between transcendentalists, who think that moral guidelines exist outside the human mind, and empiricists, who think them contrivances of the mind. In simplest terms, the options are as follows: I believe in the independence of moral values, whether from God or not, and I believe that moral values come from human beings alone, whether or not God exists. [Italics sic.]


Photo by lumierefl.

Although this perspective pulls back from the God-vs.-Science dilemma, it doesn’t quite eliminate it. Science tends to lean towards the “moral values come from human beings alone” position, and not just because any “transcendent” source of morality is probably beyond the scope of scientific inquiry. Exhibit A is the “trolley dilemma” dissected eloquently in a 2006 episode of Radio Lab: To prevent a runaway trolley from hitting a group of bystanders, most people judge it moral to pull a lever to divert the trolley onto a side track, even if doing so kills one person standing on the side track. But ask them to push that single person into the path of the trolley to stop it hitting the crowd, and most people balk.

In the experiment at the focus of that Radio Lab episode, Joshua Greene and his coauthors used functional magnetic resonance imaging to look at brain activity in people considering the two variants of the trolley dilemma, and found evidence that the dilemma creates a conflict between rational and emotional responses [PDF]. “Rational” parts of the brain were active in the decision to pull the lever, but “emotional” ones were involved in unwillingness to push a person into the trolley’s path. As Greene et al. write:

The thought of pushing someone to his death is, we propose, more emotionally salient than the thought of hitting a switch that will cause a trolley to produced similar consequences, and it is this emotional response that accounts for people’s tendency to treat these cases differently.

This result suggests that there isn’t some universal, transcendent standard of morality by which people are making decisions – in either pushing or lever-pulling, the choice is whether or not to sacrifice one life for the sake of many. But something in the fundamental architecture of the human brain determines that sometimes morality is judged in purely utilitarian terms and sometimes it isn’t. This is the kind of data that bears on the transcendence versus empiricism debate that Wilson outlines.

But empirical morality seems to run directly into the “naturalistic fallacy,” conflating that which is with that which ought to be. Wilson argues that empirical morality does not assume that the innate moral judgments of the human brain are also the judgments we ought to make – instead, it requires constant introspection and re-examination of the consequences produced by society’s moral code:

The empiricist view recognizes that the strength of commitment can wane as a result of new knowledge and experience, with the result that certain rules may be desacralized, old laws rescinded, and formerly prohibited behavior set free. It also recognizes that for the same reason new moral codes may need to be devised, with the potential of being made sacred in time.

That seems an inherently progressive point of view, one not far removed from the way Jesus described a morality that built on and universalized the old Jewish law, as with revenge: “You have heard that it was said, ‘Eye for eye, and tooth for tooth.’ But I tell you, Do not resist an evil person. If someone strikes you on the right cheek, turn to him the other also.” (Matt. 5:38-9, italics mine) And Jesus also tells his disciples to judge prophets not by their appeal to some special (transcendent?) revelation, but “by their fruit,” the consequences of their teachings (Matt. 7:15-22).

Yet – how do we judge what is a good outcome and what is a bad one? Science is good for predicting the consequences of actions and moral positions, but it is unable to determine which ones are good. Ultimately, empirical morality must proceed from some basic ethical framework, some agreed-upon prior definitions of “good” and “bad.” But that’s not really a victory for the transcendentalists. Even a perfectly articulated Platonic morality needs data from which to proceed – how many people are in the trolley’s way, and how much mass it would take to stop the trolley. Morality without reference to the empirical world is worse than meaningless. And the only access we have to the empirical world and its mechanisms is the scientific method.

Reference

J.D. Greene, R.B. Sommerville, L.E. Nystrom, J.M. Darley, J.D. Cohen (2001). An fMRI Investigation of Emotional Engagement in Moral Judgment Science, 293 (5537), 2105-8 DOI: 10.1126/science.1062872

Powell endorses Obama, defends Muslims

Former Secretary of State Colin Powell officially endorsed Barack Obama for President on Meet the Press this morning. But, incredibly, that’s not the most important thing he had to say in the interview. Referring to the Republican whisper campaign that claims Obama is a crypto-Muslim, Powell said (around 4:38 in this video):

Well, the correct answer is, he is not a Muslim, he’s a Christian. He’s always been a Christian. But the really right answer is, “What if he is?” Is there something wrong with being a Muslim in this country? The answer is no, that’s not America. Is there something wrong with some seven-year-old Muslim American kid believing that he or she could be President? Yet I have heard senior members of my own party drop this suggestion, “He’s a Muslim, and he might be associated with terrorism.” This is not the way we should be doing it in America.

Powell puts his finger on the ugly nature of the Muslim Obama rumors, which has bothered me basically from the first time I heard it, but hasn’t been much discussed in any major media outlet: why should it make a difference if Barack Obama is Muslim? As long as he’s an American citizen, his religion shouldn’t matter in a run for the Presidency. On the Media only picked it up last week – though once they did, they dissect the issue with the acumen you’d expect. More even then the endorsement, which is a big deal, I hope Powell’s MTP appearance starts a conversation about this.

Why anti-abortion voters should vote Obama

Abortion rates drop when people are more prosperous. Barack Obama’s economic policies focus on the “betterment of average families and those living at the margins.” Q.E.D.

Security theater


Photo by nedrichards.

Under the guidance of security expert Bruce Schneier, Jeffrey Goldberg goes on a quest to see what he can and can’t take through airport security. It’s simultaneously funny, sad, and worrying:

… because I have a fair amount of experience reporting on terrorists … I’ve amassed an inspiring collection of al-Qaeda T-shirts, Islamic Jihad flags, Hezbollah videotapes, and inflatable Yasir Arafat dolls (really). All these things I’ve carried with me through airports across the country. I’ve also carried, at various times: pocketknives, matches from hotels in Beirut and Peshawar, dust masks, lengths of rope, cigarette lighters, nail clippers, eight-ounce tubes of toothpaste (in my front pocket), bottles of Fiji Water (which is foreign), and, of course, box cutters. I was selected for secondary screening four times—out of dozens of passages through security checkpoints—during this extended experiment. At one screening, I was relieved of a pair of nail clippers; during another, a can of shaving cream.

The piece is a perfect encapsulation of how absurd airport security has become – all about making passengers feel like they’ve had a hard time getting to the plane, so we know terrorists would have to take their shoes off. Which would totally stop me, were I a terrorist.

via kottke.org

Old vials of chemical residue published in Science

ResearchBlogging.orgThe chief lesson from a new article in this week’s Science is, never, ever throw out out your samples. Most people are probably familiar with Stanley Miller’s classic biochemistry experiment, in which he produced amino acids in a simulation of Earth’s early atmosphere [PDF]. That experiment was groundbreaking, but since it was published in 1953 geochemsists have questioned whether it accurately reflected conditions on ancient Earth. But another of Miller’s experimental results, which went unpublished until now, may be the response to that criticism.


Volcanic steam: the origin of
life on Earth?

Photo by vtveen.

After Miller’s death in 2007, one of his former graduate students inherited a bunch of boxes full of Miller’s experimental products. The box included products from an experiment simulating steamy conditions around a volcanic vent. The student, Jeffrey Bada, decided to re-analyze the preserved product using (among other approaches) high-performance liquid chromatography, a method of identifying organic compounds that wasn’t available when Miller did his original work in the 1950s. It turns out that the volcano experiment produced an even richer array of amino acids than Miller knew [$-a]. Enough, maybe, to lay the groundwork for life. That’s what Bada and his coauthors argue:

Reduced gases and lightning associated with volcanic eruptions in hot spots or island arc–type systems could have been prevalent on the early Earth before extensive continents formed. … Amino acids formed in volcanic island systems could have accumulated in tidal areas, where they could be polymerized by carbonyl sulfide, a simple volcanic gas that has been shown to form peptides under mild conditions.

Naturally, this is only a jumping-off point for further work, starting with replication of Miller’s original experiment. But it’s a useful discovery, and a cautionary tale to any grad student who’s careless about record-keeping – you never know when that throwaway result will turn out to be useful.

References

A.P. Johnson, H.J. Cleaves, J.P. Dworkin, D.P. Glavin, A. Lazcano, J.L. Bada (2008). The Miller volcanic spark discharge experiment Science, 322 (5900), 404-404 DOI: 10.1126/science.1161527

S.L. Miller (1953). A production of amino acids under possible primitive Earth conditions Science, 117, 528-9 Full text (PDF)

Sympatric skepticism

ResearchBlogging.orgThe new issue of The Journal of Evolutionary Biology has a great article on a question that dates back to Darwin: sympatric speciation[$-a].

Sympatric speciation is simply speciation that occurs when a species splits into two reproductively isolated groups without any physical barrier arising between those groups. It’s often treated as the opposite of allopatric speciation, in which a species is split by some external barrier (a new mountain range, a river, &c) and the separated populations evolve on different trajectories until they’re unable to exchange genes even if the barrier is removed. There are a number of ways biologists think this can happen – for instance, a population of insects using two different, co-occurring host plants, might split into two species on the different hosts – but not many good cases where we’re pretty sure that it has happened.

In the new article, Kirkpatrick and his coauthors argue that the problem is one of definition. Sympatic speciation, as a concept, is set up to be impossible to test conclusively: Although it’s easy to show that two closely-related species occupy the same territory in the present, it’s rarely possible to show that they became different species while they were occupying the same territory at some point in the past, much less that they were “panmictic,” or freely interbreeding.

The problem for empiricists is that biogeographical sympatry is relatively straightforward to diagnose, but the initial condition of panmixia specified by population genetic models is virtually impossible to test.

As an alternative, the authors suggest ignoring the Platonic ideals of “allopatric” versus “sympatric” speciation, and instead concentrating on the interaction between divergent natural selection and gene flow in causing or preventing speciation. Not only is this sensible, it’s what most evolutionary ecologists are doing right now, anyway.

Reference

B.M. Fitzpatrick, J.A. Fordyce, S. Gavrilets (2008). What, if anything, is sympatric speciation? Journal of Evolutionary Biology, 1452-9 DOI: 10.1111/j.1420-9101.2008.01611.x

Paper trail

The Washington Post has copies of two secret memos in which the Bush Administration officially endorsed waterboarding. What forced the Administration to go on-record? The CIA wanted cover:

The repeated requests for a paper trail reflected growing worries within the CIA that the administration might later distance itself from key decisions about the handling of captured al-Qaeda leaders, former intelligence officials said. The concerns grew more pronounced after the revelations of mistreatment of detainees at the Abu Ghraib prison in Iraq, and further still as tensions grew between the administration and its intelligence advisers over the conduct of the Iraq war.

Prosecution, alas, remains an open question.

Via the Daily Beast.