Science online, relentlessly negative edition

Would you be less afraid of the big, bad wolf if we paid you? Photo by Eric Bégin.
  • Can’t say “mission accomplished” just yet. Wednesday was day 100 of the Deepwater Horizon oil spill. The hole has been more-or-less plugged for a while now, and surface oil is disappearing, but we’ll probably be watching the effects of this mess for years to come. Might as well have a Gulf Spill cocktail while you wait.
  • Can’t buy their love. Offering ranchers compensation for livestock lost to wolves doesn’t improve their opinion of wolves. (Conservation Maven)
  • Can’t make them shut up. Disrupting quorum sensing, or “communcation” between bacteria, is a promising new approach to treating infections. Except that—surprise!—bacteria evolve resistance to QS disruption. (Lab Rat)
  • Can’t expect them to be constrained by mere facts. The one little bit of actual science underlying claims that New Zealand was originally settled by Celts —the age of rat bones found on the islands—turns out not to be so accurate. (The Atavism)
  • Can’t afford not to plan ahead. Ecologists should start planning for the end of cheap oil, and its many unpleasant consequences. (Conservation Magazine)
  • Can’t be worse than the status quo … or can it? The “tragedy of the peer-review commons” could be resolved by compensating reviewers, either with credit towards their own submissions, or just plain ol’ money. (Jabberwocky Ecology)
  • Can’t hurt to try. Eliminating soot pollution—which leaves the atmosphere much more quickly than carbon dioxide—could cut the effects of global warming in half within less than two decades. (Wired Science)

Can’t be bothered to care for your larvae? Trick an elaisome-hunting ant, or a sex-crazed bee, into picking it up.

Science online, confused jumping spiders edition

Awwww. Photo by coniferconifer.
  • Worth it just for the Journal of Experimental Biology cover image. By selectively covering jumping spiders’ four anterior eyes with (removable) paint, behavioral biologists showed that the spiders orient using only the pair on the side of their heads. (Arthropoda)
  • Not extinct after all. The Horton Plains slender loris, that is. (Wired Science)
  • Only criminals will have serpentine. California seems to be prepared to pass a law removing serpentine‘s status as the State Rock, and, more worryingly, declaring it a carcinogen without any scientific justification. (Summing up by Highly Allochthonous; find out who to call at The Intersection)
  • So did Triceratops use a fake I.D., or what? A new analysis of fossils concludes that the dinosaur formerly known as Torosaurus is actually the adult form of Triceratops. (Dinosaur Tracking)
  • Images Not Suitable for Lunchtime. Culling Tasmanian devils infected with transmissible facial tumors doesn’t seem to reduce the prevalence of the tumors in a managed population. (Wild Muse; see also RadioLab’s discussion of the tumors.)
  • And then Elijah Wood tries to steal your girlfriend. Electrodes implanted in the hippocampus can induce amnesia. (Neuroskeptic)

This week’s video, via Arthropoda, provides scientific proof that jumping spiders are adorable. I love how she wriggles her thorax before she jumps! This video, and the ones on the linked page, are by Thomas Shahan, whose Flickr feed is an entomologist’s dream—and all CC licensed.

Still more #sbFAIL fallout: Bora bails

Photo by Roadsidepictures.

It seemed as though the dust had finally settled over the ScienceBlogs/Pepsi fiasco—until yesterday, when another shoe dropped, and it was a big one. In a typically thorough, nuanced post, Bora Zivkovic announced his decision to leave ScienceBlogs, relocating to WordPress.

If you’ll pardon the use of a horrible business buzzword, Bora is a super-connector, spending more effort than anyone else in my blogroll to pass on links, making the ScienceOnline conference a network-y blast, and offering nods to junior members of the online science writing community. In his departure essay, he makes it clear that this kind of connectivity is the point of blogs in general, and the power of ScienceBlogs in particular:

That is huge power. I keep mentioning this power every now and then (see this, this, this and this for good examples) because it is real. Sustained and relentless blogging by many SciBlings (and then many other bloggers who followed our lead) played a large role in the eventual release of ‘Tripoli Six’, the Bulgarian medical team imprisoned in Libya. Sustained blogging by SciBlings (and others who first saw it here) played a large part in educating the U.S.Senate about the importance of passing the NIH open access bill with its language intact. Blogging by SciBlings uncovered a number of different wrongdoings in ways that forced the powers-that-be to rectify them. Blogging by SciBlings brings in a lot of money every October to the DonorsChoose action. Sustained blogging by SciBlings forced SEED to remove the offending Pepsi blog within 36 hours. And if a bunch of SciBlings attack a person who did something very wrong, that person will have to spend years trying to get Google to show something a little bit more positive in top 100 hits when one googles their name (which is why I try to bite my tongue and sleep over it when I feel the temptation to go after a person). The power of the networks of individuals affects many aspects of the society, including the media. [Hyperlinks sic.]

Losing someone who believed so deeply in the social power of the blog network, and who worked so hard to boost that power and channel it to good ends, is a huge blow to ScienceBlogs. It seems to have contributed to PalMD’s decision to quit SB, and decisions by PZ Myers and Greg Laden to go on blog-strike. And now that Bora has joined the ScienceBlogs diaspora, it’ll be interesting to see how his super-connecting shapes the emerging community of independent blogs.

Science online, hermit crab hand-me-down edition

Got anything in a size 6? Photo by Vanessa Pike-Russell.
  • Gushing no more? No, the oil gusher in the Gulf of Mexico is not going to release a giant, world-killing methane bubble. Reality is bad enough. BP spent the week putting a new cap in place over the well, and … it seems to be working. Which still leaves an enormous cleanup to complete, and begs the question of why they weren’t prepared to do that 88 days ago. As always, Dr. M. at Deep Sea News is your one stop shop for oil spill news.
  • More kinds of herbivores = less plant damage. Organic farms support more evenly distributed communities of plant-eating critters, which turns out to be good for the plants. (The EEB & flow)
  • Of course, then they’re stuck with last year’s model. When they find an empty shell that’s too big for them, hermit crabs wait for a larger crab to come along and claim it, so they can occupy the cast-off shell. (MattSoniak.com)
  • Any evidence of recent vuvuzela-induced selection? A mutant form of a single gene is associated with temperature-dependent hearing loss. (Code for Life)
  • How to get MSNBC to notice a paper about protein structures: Claim you’re answering an age-old philosophical riddle that you’re not, actually. (MSNBC)

Which came first, the silly scientific hype, or the flimsy excuse to run a Muppet video? Trick question; they’re the same thing.

Science online, not so pristine anymore edition

I’ll start with the online science meta-news: The ScienceBlogs PepsiCo saga achieved a preliminary resolution yesterday, when Science Blogs pulled the PepsiCo blog. Many SBers who left in protest, however, are apparently not returning, including Brian Switek (of Laelaps) and Rebecca Skloot. Skullsinthestars has taken on the public service of tracking departing SBers, which include some of the biggest names on the site. Carl Zimmer compiles his own list, and adds some scathing remarks. David Dobbs gave his reasons for not returning, Martin Robbins of the Lay Scientist neatly summed up the issues of reader trust and respect for individual writers underlying the fracas, and Curtis Brainard weighed in at the Columbia Journalism Review. No word yet on coverage by On the Media, but I’m still hoping.

Say it ain’t so, Glacier National Park. Photo by jby.

Meanwhile, in actual science news:

  • Still gushing. As of today (Friday), it’s been 81 days since BP broke the Gulf. Yet another projection of long-term surface dispersal of the oil suggests the U.S. east coast is in trouble. At Deep Sea News, Dr. M rounds up the latest news and Allie Wilkinson flies over the slick with the Coast Guard. Meanwhile ProPublica digs into BP’s horrendous safety record and foot-dragging on compensation and cooperation with scientists.
  • Missed this earlier. BlagHag reports on Portland and Evolution 2010.
  • I’m confused. What about spinach? A new study of bone structure suggests Neanderthals were totally pumped, with “Popeye-like forearms,” possibly because of a highly carnivorous diet. (Discovery News)
  • Well, it doesn’t look its age. New fossils reveal that multicellular life is at least 2.1 billion years old, more than three times as old as previously thought. (ScienceDaily)
  • This just makes me sad. Environmental pollutants, including pesticides, are extensive at national parks—with particularly bad levels at Glacier and Sequoia. (Conservation Maven)
  • It works for cpDNA, anyway. A new method for extraction and amplification of DNA from plant tissue may make life simpler for lab rats like me. (Uncommon Ground)
  • Cichlids do it wherever they can. Since colonizing a volcanic crater lake in Nicaragua—as little as a century ago—a population of Midas cichlid fish has evolved into two distinct forms, with marked dietary differences. (NeuroDojo)
  • Dudes should not wear corsets. Because they may cause you to grow a bone in your penis. Really. (scicurious)

And, as a video-based closing thought, here’s footage of a cuckoo chick evicting the other eggs—and chicks!—in its adoptive nest. The initial, um, cuckholding is captured here

Science Blogs in refreshing, sugary ethics kerfuffle

ScienceBlogs, the mothership of online nerdery, just made a big, bad-publicity splash, launching a nutrition-themed blog sponsored—and written—by PepsiCo.

Photo by Roadsidepictures.

Readers have been irked, and many ScienceBloggers, for whom this apparently came as a surprise, are expressing feelings ranging from barn-burning outrage to nuanced concern to biting dismissal—and also resigning in protest (or exhaustion). It isn’t the first time ScienceBlogs has run a corporate-sponsored column, but those previous ones had writers who were independent of the sponsor. The affiliations of the new blog, Food Frontiers, are indicated in the header bar and the masthead, but not especially loudly—and the blog’s content will apparently be aggregated to Google News alongside the work of non-corporate ScienceBloggers. As Knight Science Journalism points out, ScienceBlogs’ treatment of Food Frontiers pretty clearly violates old media journalistic ethics.

In an e-mail to ScienceBloggers leaked to The Guardian, SEED editor Adam Bly wrote

We think the conversation should include scientists from academia and government; we also think it should include scientists from industry. Because industry is increasingly the interface between science and society. It is our hope that the Xeroxes and Bell Labs of the future will have a real presence on SB – that they will learn from our readers and we will learn from them.

That’s a pretty poor equivalency Bly is making, frankly. As far as I can tell, the academic scientists who write for ScienceBlogs do so without an explicit mandate from their universities or even funding agencies. Pepsico food scientists writing on behalf of Pepsico are not doing the same kind of science communication.

With more visible caveats, and maybe some sort of special treatment in the ScienceBlogs RSS feeds, Food Frontiers doesn’t have to be the end of all credibility for ScienceBlogs. But, boy, it doesn’t look good right now—and, if I’d spent a substantial portion of my blogging career helping to build ScienceBlogs into the hub of respectable online science writing it’s become, I’d be pretty upset. It looks like ScienceBlogs is losing some really strong writers over this, and that seems like a poor trade-off.

The only possible upside? The possibility we’ll get to hear PZ Meyers and Rebecca Skloot interviewed by Bob Garfield.

Losing the scientific lede, continued

So, in spite of having pretty consciously tweaked the science blogging community when I wrote, in Monday’s post

Blog posts are best when they’re less than 700 or 800 words long, and their contents are readily summed up in a headline and only slightly expanded upon by the first paragraph. Think newspaper, not magazine articles. Do people read posts longer than that? Sure they do. But the longer a post is, the more possibility there is that some fraction of the readers will quit reading before the end, and maybe even pass on links or comments based on that incomplete understanding. I realize I’m not in the majority of online science writers in taking this position, but I think this better reflects how the average online reader reads.

I nevertheless managed to miss when Bora Zivkovic gently tweaked back over Twitter:

Do you agree? Losing the scientific lede: http://bit.ly/94zroM by @JBYoder compare: http://bit.ly/cJj3vs Long is fine.

But I did notice a larger-than-usual traffic spike associated with the post, and, being pretty sure of the source, I thought I’d just add to what I said previously, in light of the quite coherent and reasonable defense Bora makes for long-form posts.

In Bora’s older post, the point is not so much that blog posts should be long, but that blogs are a good venue for science communication because posts can be long:

Context – there is no space for context in a short article. Yet it is the context that is the most important part of science coverage, and of science itself – remember the “shoulders of giants”? Placing a new study within a historical, philosophical, theoretical and methodological context is the key to understanding what the paper is about and why it is important, especially for the lay audience. Even scientific papers all provide plenty of context in the Introduction portion (and often in the Discussion as well) which is sprinkled with references to earlier studies.

I strongly agree that context is important, and I also agree that blogs are great at providing context—but because a post can link to context, not necessarily provide it itself.

Much of my feelings about what a good blog post should look like are determined by two things, both of which are more aesthetic than empirically justifiable. Both are also related to my all-but-minoring in English as an undergraduate: I am a devoted follower of Strunk and White, and I wrote for the campus paper and took courses in newspaper writing. So I try to follow the inverted pyramid to some approximation, and when a post starts to spill below what displays in a browser window without scrolling down, much like this one, I start to worry that I’m not omitting needless words.

It’s my own online reading experience that short posts, which communicate a single scientific result, work better than longer posts trying to synthesize lots of different results. Again, that’s mostly an aesthetic judgment, but as I said in Monday’s post, I think that short posts are more likely to be read to the end, and less likely to result in distortions as a post propagates across social media (or, rather, only has the distortions I’ve introduced myself!).

Of course, maybe that’s a moot point. If a reader mischaracterizes my post in a Facebook update, but includes a link to it, everyone who clicks through will see that the post said something different. Right? Well, again, when they do click through, I suppose I’d like them to be able to take in the point of the post quickly, and understand what it actually says without needing to read all the way to the end.

Losing the scientific lede

ResearchBlogging.orgOver at SEED, Dave Munger reflects on how online publishing and dissemination methods can strip the nuance from scientific news:

I thought I was being careful to explain the results of several studies, showing that suicide is a difficult problem with many potential contributing factors and confounding variables, including mental illness, depression, and the seemingly contradictory influences of intelligence. Yet on social-networking sites, many readers latched on to one finding: That countries with higher average IQ tend to have higher suicide rates.

Munger suggests that this problem can be mitigated by careful consideration of both the nut graf sent out via Twitter and RSS and the audience receiving them, and that’s clearly right. But I think it’s also worth considering whether some subjects are less appropriate for blogs.

Consider your medium! Photo by K!T.

Blog posts are best when they’re less than 700 or 800 words long, and their contents are readily summed up in a headline and only slightly expanded upon by the first paragraph. Think newspaper, not magazine articles. Do people read posts longer than that? Sure they do. But the longer a post is, the more possibility there is that some fraction of the readers will quit reading before the end, and maybe even pass on links or comments based on that incomplete understanding. I realize I’m not in the majority of online science writers in taking this position, but I think this better reflects how the average online reader reads.

Posts about individual, straightforward results work well in that context. For example, my colleague Jeanne Robertson recently discovered that desert lizards under divergent selection for camouflage have also become confused about visual mating signals. It’s simple—one lizard population moved to white sand dunes and evolved lighter coloration, so now light males think that dark males from the ancestral population look like females—and it supports a lot of catchy headlines that don’t sacrifice accuracy. The title of the talk at Evolution 2010 in which Robertson presented the discovery was “Dude looks like a lady.” I’d say the Wired Science article I linked to above captures all the interesting details.

Complexity doesn’t work so well. Scientific papers based on broad surveys of the literature, or many interrelated experiments, are inevitably going to lose some potentially important nuance when translated into an RSS-suitable post title, and explaining them accurately may take a lot more than 700 words. I’ve run into exactly this trying to write about complicated papers—either I go on for longer than I think my readers are likely to follow, or I have to omit detail and rely on readers to follow up with the links to the literature.

Mind you, this length-versus-content balance is a universal problem in disseminating scientific results—just look at the short-form journals Science and Nature. Some results are perfectly suited to the three-pages-and-online-supplement format, like an experimental result showing that sexually-reproducing lines of the worm Caenorhabditis elegans maintain more fitness in the face of mutation than asexual lines [PDF]. (I’ve posted about another result in this experimental system.) It’s a simple result easily understood even without getting into the Supplementary Material. Compare that to a recent statistical survey of evolutionary trees that concluded species interactions weren’t important in the history of life [$a]. That, too, fits into three pages of Nature, but the result is deceptively simple—even after delving into the Supplementary Material, the statistical reasoning underlying the core result isn’t clear, as the comments thread on my post about the piece reveals.

Which isn’t to say that online science writers should stick to covering simple experimental results or flashy natural historical notes, any more than scientists should never tackle complicated projects. They do, however, need to consider the limitations of the medium in which they report scientific results. Is a topic too complicated to fit in a single post? Maybe it’s suitable for a series of posts. I like how Slate handles this, building collections of interrelated articles that can stand alone, but link into something like a long-form magazine article—see Will Saletan’s great series on memory manipulation for a recent example.

And now I’ve blown through 700 words in the service of an extended, hopefully nuanced, discussion. Take from that what you will.

References

Morran, L., Parmenter, M., & Phillips, P. (2009). Mutation load and rapid adaptation favour outcrossing over self-fertilization. Nature, 462 (7271), 350-2 DOI: 10.1038/nature08496

Venditti, C., Meade, A., & Pagel, M. (2009). Phylogenies reveal new interpretation of speciation and the Red Queen. Nature, 463 (7279), 349-52 DOI: 10.1038/nature08630

Science online, #evol2010 hangover edition

Between the all-day conferencing of Evolution 2010 and the fact that car trouble stranded me in Kennewick, Washington, almost exactly halfway between Portland and Moscow, I haven’t done enough online reading to justify my usual end-of the week roundup. I will, however, note a few things:

And, lastly, bluebirds are still frickin’ spectacular photo subjects.

Photo by kevincole.

Science online, Portland-bound edition

Just two days after I get back to Moscow from that Santa Barbara, I’m off again to Portland, for Evolution 2010. As in previous years, I’ll try to post daily notes about cool talks I see at the meeting, and maybe some photos of Portland, where the weather is allegedly going to be warm and sunny. In the meantime, here’s what’s been going on in the science blogosphere this week:

Never again? Photo by Vern and Skeet.
  • Still gushing. Earlier this week, BP removed the containment cap on the Gulf of Mexico oil gusher following a mishap with an underwater robot, but it’s back for now. Internal documents suggest that, early on in the disaster, BP knew a lot more oil was flowing than they told the federal government. Hydrology experts are considering how existing flow control structures might be able to use the Mississippi River itself to protect coastal wetlands from oil.
  • Reconsider that sashimi. An environmentalist group is petitioning to protect bluefin tuna, which spawn in the Gulf of Mexico, under the Endangered Species Act. (NY Times)
  • Meanwhile, in even longer-running fossil fuel disasters. In Pennsylvania coal country, underground mine fires burn unchecked. (SEED Magazine)
  • Walk like a man. A newly-discovered fossil of Australopithecus afarensis—the same species as “Lucy”—has a ribcage more like a human’s than an ape’s, suggesting that it stood upright. (A Primate of Modern Aspect)
  • Why did the moose cross the road? Larger mammals with broader home ranges and lower reproductive rates are at greater risk of becoming roadkill. (Conservation Maven)
  • No word about preference for rock’n’roll, though. Attitudes about sex are better predictors of attitudes about drug use and religion than “abstract political ideologies.” (Blag Hag)
  • Wait, there’s software to do that? You never know when the Methods section of an otherwise obscure paper is going to turn up something useful. (NeuroDojo)

And now, a video of aggregating ladybugs.