Science online, short work-week edition

Make mine a double. Photo by Ballistik Coffee Boy.
  • Not as obvious as it seems. Computer modeling suggests that giraffes are much worse swimmers than other ungulates—which suggests that giraffe populations should be easily isolated by water barriers. (Tetrapod Zoology)
  • Guess it’s time for that second cup. Regular coffee drinkers need their morning dose of caffeine just to achieve the baseline alertness of non-coffee-drinkers. (Yahoo! News)
  • Jet-setting dinos. New fossils show that ceratopsian dinosaurs (the group including Triceratops) had a wider range than previously thought, colonizing the landmass that would become modern Europe. (Smithsonian.com)
  • No carbon-free lunches. A new analysis of plant communities’ ability to absorb carbon dioxide suggests that managed landscapes like cropland may emit more of the greenhouse gas than they absorb. (Conservation Maven)
  • They still haven’t explained why Justin Bieber is so popular. As with biological evolution before it, the study of cultural evolution is advancing as scientists develop methods to directly experiment with cultural transmission. (A Replicated Typo)
  • More bad news. Computer simulations suggest that the Gulf of Mexico oil spill, now in its sixth week, will probably spread to the Atlantic by the end of the year. (Wired Science)

Here’s video of one scenario from the oil-in-the-Atlantic study.

Freeloading cuckoos force their hosts to diversify

ResearchBlogging.orgAshy-throated parrotbills have a problem every time breeding season rolls around: how do they know whether the eggs in their nests are their own, or those of the common cuckoo? A study recently released in PLoS ONE suggests that one population of parrotbills fights this brood parasitism by laying eggs of different colors.

Common cuckoos lay eggs that mimic those of the host birds they trick into raising cuckoo chicks. Photo by Sergey Yeliseev.

Brood parasitism, in which one bird species lays its eggs in another bird’s nest, has long been considered a likely cause of coevolution [$a] between brood parasites and their hosts, because the interaction exerts strong natural selection on both species. Hosts suffer major fitness consequences if they take on the raising of another bird’s chick—and brood parasite chicks are often bigger, and more aggressive, than their adoptive “siblings,” sometimes pushing them right out of the nest. On the other hand, brood parasites run the risk of losing their offspring to hosts who can recognize a strange egg and eject it from the nest.

One way to avoid raising a cuckoo chick is to lay eggs that look different from cuckoo eggs. Cuckoos counteract this defense by evolving eggs that match their most common hosts—a selective regime proposed to explain rapid rates of species formation in parasitic cuckoo lineages. In the new study, Yang et al. show that this pattern plays out within a single population of ashy-throated parrotbills and the cuckoos that parasitize them. At a forested nature reserve in southwestern China, the team found that parrotbills lay eggs of three different colors: white, blue, or (rarely) pale blue. Common cuckoos in the same area also laid eggs of those three colors, in about the same proportions as the parrotbills—and cuckoo eggs were usually found in host nests with eggs of the same color. Experimental introduction of eggs into parrotbill nests confirmed that parrotbills were more likely to reject eggs colored differently from their own.

That result captures many of the necessary conditions for coevolution between ashy-throated parrotbills and the local cuckoo population; the frequency with which parrotbills reject eggs unlike their own should exert strong selection on the cuckoos, and (conversely) the frequency with which parrotbills fail to reject cuckoo eggs that look like their own should exert selection on the hosts. This isn’t the first case in which brood parasites have apparently forced their hosts to diversify, however—notably, African village weaverbirds evolved less varied egg patterning after being introduced into parasite-free habitats on Mauritius and Hispaniola.

References

Krüger, O., Sorenson, M., & Davies, N. (2009). Does coevolution promote species richness in parasitic cuckoos? Proc. Royal Soc. B, 276 (1674), 3871-9 DOI: 10.1098/rspb.2009.1142

Lahti, D. (2005). Evolution of bird eggs in the absence of cuckoo parasitism. Proc. Nat. Acad. Sci. USA, 102 (50), 18057-62 DOI: 10.1073/pnas.0508930102

Rothstein, S. (1990). A model system for coevolution: Avian brood parasitism. Ann. Rev. Ecology and Systematics, 21 (1), 481-508 DOI: 10.1146/annurev.es.21.110190.002405

Yang, C., Liang, W., Cai, Y., Shi, S., Takasu, F., Møller, A., Antonov, A., Fossøy, F., Moksnes, A., Røskaft, E., & Stokke, B. (2010). Coevolution in action: Disruptive selection on egg colour in an avian brood parasite and its host. PLoS ONE, 5 (5) DOI: 10.1371/journal.pone.0010816

Programming note

I celebrated the Memorial Day weekend by, among other things, not getting around to writing the final installment of the Big Four series, which was scheduled for sometime this week. I did write up a piece about a neat little study of brood parasitism, which I wanted to discuss while it’s fresh anyway.

I’ll complete the Big Four series next week, with a discussion of migration.

Science online, no layovers edition

The latest word on the Gulf of Mexico oil spill, as of the time at which I set the timer for this post to publish (circa 2230, 27 May), seems to be: that BP’s “top kill” maneuver, which would have plugged the gushing wellhead with mud, is not quite working as it ought. Meanwhile, the spill is now officially the worst in U.S. history, and poised to get even messier if it’s not contained by the start of what is projected to be a busier than usual hurricane season. Ugh. In non-oil-related science news:

Migrating bar-tailed godwits can fly 7,100 miles without a break. Photo by jvverde.
  • The small and squeaky shall inherit the Earth. Fossil evidence from a more gradual episode of warming 12,000 years ago suggests that some rodents, like deer mice, will become more abundant as the globe warms. (Not Exactly Rocket Science)
  • Got it made in the shade. Coffee farms practicing shade-growing techniques host more bee species, which may mean better pollination of the crop. (Coffee and Conservation)
  • … and boy are my wings tired! The advent of lightweight GPS and more sophisticated tracking methods has allowed ornithologists to directly monitor migrating birds—revealing nonstop flights of thousands of miles. (NY Times)
  • One more reason not to stand right behind a mammoth. A new study tracks ancient levels of atmospheric methane, and suggests that human overhunting of North America’s methane-farting megafauna caused the last ice age. (io9)
  • I know what you’re thinking, punk—only one of those critters is a true bug. Bombardier beetles, cabbage aphids, and velvet worms all employ explosive chemical weaponry as defenses, making them the “ballistics experts of the bug world.” (Ecotone)
  • No evidence of fossilized tartar sauce. Paleontologists have discovered a fossil frog with a fossil fish in its stomach. (Laelaps)

And finally, there’s a new version of the totally creepy Big Dog walking robot—it’s now cat-sized, and somehow more adorable than creepy. Until a pack of them show up to take me away as a slave to our new robot overlords, anyway. (via Anthony Hecht at Slog, who declares it “still creepy”)

Further shameless self-promotion: Interview at A Blog Around the Clock

As part of the early promotion for next year’s ScienceOnline conference, science superblogger and chronobiologist Bora Zivkovic asked me to answer a few questions over at A Blog Around the Clock, concerning me, my research, why I write here at D&T, and what a great time I had at ScienceOnline2010. I think this is my first appearance at a blog other than D&T—thanks for having me, Bora!

Shameless self-promotion: 3QD Prize in Science

It’s come to my attention that the polymath blog 3quarksdaily has announced its second annual prize in science blogging, which will be judged this year by none other than Richard Dawkins. Prizes include fame, glory, and actual cash money, apparently. I’ve already self-nominated “Dethroning the Red Queen?”, but other parties who enjoy D&T are (ahem) free to nominate additional posts. Following Nerdy Christie’s lead, allow me to suggest a few other posts with which I’m well pleased:

Or you’re free to nominate anything posted since 23 May, 2009. Any given person can only make one nomination, though, so choose carefully.

The “Big Four,” part III: Genetic drift

This post is the third in a special series about four fundamental forces in evolution: natural selection, mutation, genetic drift, and migration.

ResearchBlogging.orgHave a coin handy? Flip it.

If your coin is fair, I can guess that it’s come up heads and have a fifty percent chance, or probability equal to 0.5, that I’ve guessed correctly. Now, flip the coin ten times in a row. How many times did heads come up? Again, the best guess is that it came up five times—but it’s not all that unlikely that it came up six times, or four, or even as many as eight.

God may not play dice, but evolution does. Photo by jcotherals.

Now, if you flipped the coin an infinite number of times, then exactly fifty percent of the total flips would be heads. But who has time for that? Similarly, populations of living organisms are not infinite—often far from it—and this means that the frequency of genes in those finite populations can change as a result of the same phenomenon at work on your coin. Biologists call this genetic drift.

Evolution at random

The basic principle behind genetic drift is that each generation is a process of sampling from the parental population to create a population of offspring. As most folks know from discussions of opinion polls, smaller samples tend to be less representative of the pool from which they are drawn. Say a population of annual plants begins with equal numbers of plants bearing blue flowers or white flowers. If only ten seeds survive from that population to form the next generation, you would expect them to be five blue-flowered and five white-flowered seeds. However, it’s just like flipping a coin ten times: the probability of drawing six blue seeds is actually a little less than 21%, or one in five. The probability of drawing nine blue seeds is almost one in one hundred—small, but hardly impossible.

Consider, too, that once you draw six blue seeds, it becomes slightly more likely that you’ll draw seven in the next generation, which makes it slightly more likely you’ll draw eight in the next. Repeated selection of small samples means that traits can drift to fixation (or loss, depending on your perspective), so that everyone in the population has the same trait. Rare traits are more likely to be lost to drift, and large populations are less prone to its effects. This is nicely illustrated in this online simulation from the University of Connecticut—over time, a focal gene fixes or disappears from the population as a function of the population size and the initial frequency of the gene.

In general, drift interferes with the efficient operation of natural selection. Even in relatively large populations, the probability that a new beneficial mutation will become fixed is approximately twice the selective benefit of that mutation—typically very small. (This is from a 1927 paper by J.B.S. Haldane that doesn’t seem to be online in any form, but which is discussed by Otto and Whitlock in a 1997 paper extending the classic result.) In a small enough population, a trait can become fixed even if it reduces its carriers’ fitness [PDF].

Evolving differences without selection

As I’ve discussed above, the effect of drift in a single population is to reduce variation as rare traits are lost to chance. This means that, when more than one independently-evolving population is considered, drift actually increases variation among them [$a], as different traits fix or are lost in each. That is, drift can make isolated populations evolve into different species even if they experience identical regimes of natural selection.

Woodland salamanders (genus Plethodon: left, P. vehiculum; right, P. yonahlossee) have diversified not by adapting to different environments, but by being homebodies. Photos by squamatologist.

A flagship example of this sort of non-adaptive diversification are the woodland salamanders of eastern North America, genus Plethodon. Woodland salamanders are quite diverse, having accumulated more than 40 species in the last 27 million years, but all of these species live in more or less the same habitat, under the leaf litter in moist Appalachian forests, and many are “cryptic” species distinguishable only by DNA analysis. How, then, did Plethodon become so diverse?

The answer is simply that woodland salamanders don’t travel very well. Salamanders need moist environments–they breathe through their skin, which doesn’t work well if it dries out—and so have difficulty moving from one stream drainage to another. This means that it doesn’t take much distance to isolate one Plethodon population from another, allowing drift to take them in different directions. Salamanders form new species, in other words, by staying at home.

This effect of drift means that biologists must adjust their “null” expectation when they observe differences in natural populations—the mere fact that some Joshua trees look different from other Joshua trees does not necessarily mean that natural selection has created those differences. Furthermore, the degree to which drift or selection can generate differences among populations depends strongly on the fourth force in the Big Four, which I’ll discuss next week: migration.

References

Godsoe, W., Yoder, J., Smith, C., & Pellmyr, O. (2008). Coevolution and divergence in the Joshua tree/yucca moth mutualism. The American Naturalist, 171 (6), 816-23 DOI: 10.1086/587757

Kozak, K., Weisrock, D., & Larson, A. (2006). Rapid lineage accumulation in a non-adaptive radiation: phylogenetic analysis of diversification rates in eastern North American woodland salamanders (Plethodontidae: Plethodon) Proc. Royal Soc. B, 273 (1586), 539-46 DOI: 10.1098/rspb.2005.3326

Lande, R. (1992). Neutral theory of quantitative genetic variance in an island model with local extinction and colonization. Evolution, 46 (2), 381-9 DOI: 10.2307/2409859

Otto S.P., & Whitlock M.C. (1997). The probability of fixation in populations of changing size. Genetics, 146 (2), 723-33 PMID: 9178020

Wright S (1931). Evolution in Mendelian populations. Genetics, 16 (2), 97-159 PMID: 17246615

A month-long oil spill

Now that the Gulf of Mexico oil spill is more than a month old, Dr. M. of Deep Sea News rounds up the bad news and discusses long-term consequences.

Toxins from the oil spill will likely integrate into the food chain and eventually arrive to the deep in the form of food. Flux of material from the ocean surface is also likely to transport oil and toxins to the deep ocean. Shading by the oil slick might also inhibit phytoplankton production and reduce carbon flux to the deep sea meaning less food for seafloor organisms. An overall reduction of biodiversity both in terms of species and genetic diversity is expected.


A team with the International Bird Rescue Research Center cleans an oil-soaked brown pelican. Photo by IBRCC.

It’s nice to have a feeder right outside the living room window

Male Calliope hummingbird. Photo by jby.

Science online, colorful results edition

My favorite is Adaptationist Green. Photo by Patrick Powers.
  • Good science doesn’t match the sofa. People tend to prefer colors they associate with things they like. Therefore, natural selection is primarily responsible for humans’ color preferences. Wait, what? (Neurotopia)
  • I’m pretty sure that’s what “generalist” means. Invasive plants are no better defended than natives against a generalist native herbivore. (Conservation Maven)
  • Did you mean gesundheit? Google’s method of monitoring flu outbreaks by tracking search terms is almost as accurate as the CDC’s more expensive monitoring program. (Scientific American, but see Virology Blog)
  • From the folks who brought you octopodes wearing coconut shells: Solving a mystery that puzzled scientists since Aristotle, biologists have shown that the female argonaut octopus uses her paper-thin shell to trap air bubbles and control her buoyancy. (Not Exactly Rocket Science, Wired)
  • Insert “1up” joke here. Can playing video games improve cognitive skills? Dave Munger weighs the evidence. (SEEDMAGAZINE.com)
  • There are more than you think. This week’s Radiolab epdisode, “Famous Tumors,” is awesome with a side of neat evolutionary biology. (Radiolab)
  • No lightning involved whatsoever. A team led by Craig “first draft human genome” Venter built a genome from scratch, then inserted it into a bacterial cell and brought it to life. (NPR, NY Times, Wired, Oscillator)

And, in this week’s video, evidence that even something as bad-tempered and grungy as sloths are adorable when they’re young and properly groomed.