Science online, not so pristine anymore edition

I’ll start with the online science meta-news: The ScienceBlogs PepsiCo saga achieved a preliminary resolution yesterday, when Science Blogs pulled the PepsiCo blog. Many SBers who left in protest, however, are apparently not returning, including Brian Switek (of Laelaps) and Rebecca Skloot. Skullsinthestars has taken on the public service of tracking departing SBers, which include some of the biggest names on the site. Carl Zimmer compiles his own list, and adds some scathing remarks. David Dobbs gave his reasons for not returning, Martin Robbins of the Lay Scientist neatly summed up the issues of reader trust and respect for individual writers underlying the fracas, and Curtis Brainard weighed in at the Columbia Journalism Review. No word yet on coverage by On the Media, but I’m still hoping.

Say it ain’t so, Glacier National Park. Photo by jby.

Meanwhile, in actual science news:

  • Still gushing. As of today (Friday), it’s been 81 days since BP broke the Gulf. Yet another projection of long-term surface dispersal of the oil suggests the U.S. east coast is in trouble. At Deep Sea News, Dr. M rounds up the latest news and Allie Wilkinson flies over the slick with the Coast Guard. Meanwhile ProPublica digs into BP’s horrendous safety record and foot-dragging on compensation and cooperation with scientists.
  • Missed this earlier. BlagHag reports on Portland and Evolution 2010.
  • I’m confused. What about spinach? A new study of bone structure suggests Neanderthals were totally pumped, with “Popeye-like forearms,” possibly because of a highly carnivorous diet. (Discovery News)
  • Well, it doesn’t look its age. New fossils reveal that multicellular life is at least 2.1 billion years old, more than three times as old as previously thought. (ScienceDaily)
  • This just makes me sad. Environmental pollutants, including pesticides, are extensive at national parks—with particularly bad levels at Glacier and Sequoia. (Conservation Maven)
  • It works for cpDNA, anyway. A new method for extraction and amplification of DNA from plant tissue may make life simpler for lab rats like me. (Uncommon Ground)
  • Cichlids do it wherever they can. Since colonizing a volcanic crater lake in Nicaragua—as little as a century ago—a population of Midas cichlid fish has evolved into two distinct forms, with marked dietary differences. (NeuroDojo)
  • Dudes should not wear corsets. Because they may cause you to grow a bone in your penis. Really. (scicurious)

And, as a video-based closing thought, here’s footage of a cuckoo chick evicting the other eggs—and chicks!—in its adoptive nest. The initial, um, cuckholding is captured here

Science Blogs in refreshing, sugary ethics kerfuffle

ScienceBlogs, the mothership of online nerdery, just made a big, bad-publicity splash, launching a nutrition-themed blog sponsored—and written—by PepsiCo.

Photo by Roadsidepictures.

Readers have been irked, and many ScienceBloggers, for whom this apparently came as a surprise, are expressing feelings ranging from barn-burning outrage to nuanced concern to biting dismissal—and also resigning in protest (or exhaustion). It isn’t the first time ScienceBlogs has run a corporate-sponsored column, but those previous ones had writers who were independent of the sponsor. The affiliations of the new blog, Food Frontiers, are indicated in the header bar and the masthead, but not especially loudly—and the blog’s content will apparently be aggregated to Google News alongside the work of non-corporate ScienceBloggers. As Knight Science Journalism points out, ScienceBlogs’ treatment of Food Frontiers pretty clearly violates old media journalistic ethics.

In an e-mail to ScienceBloggers leaked to The Guardian, SEED editor Adam Bly wrote

We think the conversation should include scientists from academia and government; we also think it should include scientists from industry. Because industry is increasingly the interface between science and society. It is our hope that the Xeroxes and Bell Labs of the future will have a real presence on SB – that they will learn from our readers and we will learn from them.

That’s a pretty poor equivalency Bly is making, frankly. As far as I can tell, the academic scientists who write for ScienceBlogs do so without an explicit mandate from their universities or even funding agencies. Pepsico food scientists writing on behalf of Pepsico are not doing the same kind of science communication.

With more visible caveats, and maybe some sort of special treatment in the ScienceBlogs RSS feeds, Food Frontiers doesn’t have to be the end of all credibility for ScienceBlogs. But, boy, it doesn’t look good right now—and, if I’d spent a substantial portion of my blogging career helping to build ScienceBlogs into the hub of respectable online science writing it’s become, I’d be pretty upset. It looks like ScienceBlogs is losing some really strong writers over this, and that seems like a poor trade-off.

The only possible upside? The possibility we’ll get to hear PZ Meyers and Rebecca Skloot interviewed by Bob Garfield.

Losing the scientific lede, continued

So, in spite of having pretty consciously tweaked the science blogging community when I wrote, in Monday’s post

Blog posts are best when they’re less than 700 or 800 words long, and their contents are readily summed up in a headline and only slightly expanded upon by the first paragraph. Think newspaper, not magazine articles. Do people read posts longer than that? Sure they do. But the longer a post is, the more possibility there is that some fraction of the readers will quit reading before the end, and maybe even pass on links or comments based on that incomplete understanding. I realize I’m not in the majority of online science writers in taking this position, but I think this better reflects how the average online reader reads.

I nevertheless managed to miss when Bora Zivkovic gently tweaked back over Twitter:

Do you agree? Losing the scientific lede: http://bit.ly/94zroM by @JBYoder compare: http://bit.ly/cJj3vs Long is fine.

But I did notice a larger-than-usual traffic spike associated with the post, and, being pretty sure of the source, I thought I’d just add to what I said previously, in light of the quite coherent and reasonable defense Bora makes for long-form posts.

In Bora’s older post, the point is not so much that blog posts should be long, but that blogs are a good venue for science communication because posts can be long:

Context – there is no space for context in a short article. Yet it is the context that is the most important part of science coverage, and of science itself – remember the “shoulders of giants”? Placing a new study within a historical, philosophical, theoretical and methodological context is the key to understanding what the paper is about and why it is important, especially for the lay audience. Even scientific papers all provide plenty of context in the Introduction portion (and often in the Discussion as well) which is sprinkled with references to earlier studies.

I strongly agree that context is important, and I also agree that blogs are great at providing context—but because a post can link to context, not necessarily provide it itself.

Much of my feelings about what a good blog post should look like are determined by two things, both of which are more aesthetic than empirically justifiable. Both are also related to my all-but-minoring in English as an undergraduate: I am a devoted follower of Strunk and White, and I wrote for the campus paper and took courses in newspaper writing. So I try to follow the inverted pyramid to some approximation, and when a post starts to spill below what displays in a browser window without scrolling down, much like this one, I start to worry that I’m not omitting needless words.

It’s my own online reading experience that short posts, which communicate a single scientific result, work better than longer posts trying to synthesize lots of different results. Again, that’s mostly an aesthetic judgment, but as I said in Monday’s post, I think that short posts are more likely to be read to the end, and less likely to result in distortions as a post propagates across social media (or, rather, only has the distortions I’ve introduced myself!).

Of course, maybe that’s a moot point. If a reader mischaracterizes my post in a Facebook update, but includes a link to it, everyone who clicks through will see that the post said something different. Right? Well, again, when they do click through, I suppose I’d like them to be able to take in the point of the post quickly, and understand what it actually says without needing to read all the way to the end.

Losing the scientific lede

ResearchBlogging.orgOver at SEED, Dave Munger reflects on how online publishing and dissemination methods can strip the nuance from scientific news:

I thought I was being careful to explain the results of several studies, showing that suicide is a difficult problem with many potential contributing factors and confounding variables, including mental illness, depression, and the seemingly contradictory influences of intelligence. Yet on social-networking sites, many readers latched on to one finding: That countries with higher average IQ tend to have higher suicide rates.

Munger suggests that this problem can be mitigated by careful consideration of both the nut graf sent out via Twitter and RSS and the audience receiving them, and that’s clearly right. But I think it’s also worth considering whether some subjects are less appropriate for blogs.

Consider your medium! Photo by K!T.

Blog posts are best when they’re less than 700 or 800 words long, and their contents are readily summed up in a headline and only slightly expanded upon by the first paragraph. Think newspaper, not magazine articles. Do people read posts longer than that? Sure they do. But the longer a post is, the more possibility there is that some fraction of the readers will quit reading before the end, and maybe even pass on links or comments based on that incomplete understanding. I realize I’m not in the majority of online science writers in taking this position, but I think this better reflects how the average online reader reads.

Posts about individual, straightforward results work well in that context. For example, my colleague Jeanne Robertson recently discovered that desert lizards under divergent selection for camouflage have also become confused about visual mating signals. It’s simple—one lizard population moved to white sand dunes and evolved lighter coloration, so now light males think that dark males from the ancestral population look like females—and it supports a lot of catchy headlines that don’t sacrifice accuracy. The title of the talk at Evolution 2010 in which Robertson presented the discovery was “Dude looks like a lady.” I’d say the Wired Science article I linked to above captures all the interesting details.

Complexity doesn’t work so well. Scientific papers based on broad surveys of the literature, or many interrelated experiments, are inevitably going to lose some potentially important nuance when translated into an RSS-suitable post title, and explaining them accurately may take a lot more than 700 words. I’ve run into exactly this trying to write about complicated papers—either I go on for longer than I think my readers are likely to follow, or I have to omit detail and rely on readers to follow up with the links to the literature.

Mind you, this length-versus-content balance is a universal problem in disseminating scientific results—just look at the short-form journals Science and Nature. Some results are perfectly suited to the three-pages-and-online-supplement format, like an experimental result showing that sexually-reproducing lines of the worm Caenorhabditis elegans maintain more fitness in the face of mutation than asexual lines [PDF]. (I’ve posted about another result in this experimental system.) It’s a simple result easily understood even without getting into the Supplementary Material. Compare that to a recent statistical survey of evolutionary trees that concluded species interactions weren’t important in the history of life [$a]. That, too, fits into three pages of Nature, but the result is deceptively simple—even after delving into the Supplementary Material, the statistical reasoning underlying the core result isn’t clear, as the comments thread on my post about the piece reveals.

Which isn’t to say that online science writers should stick to covering simple experimental results or flashy natural historical notes, any more than scientists should never tackle complicated projects. They do, however, need to consider the limitations of the medium in which they report scientific results. Is a topic too complicated to fit in a single post? Maybe it’s suitable for a series of posts. I like how Slate handles this, building collections of interrelated articles that can stand alone, but link into something like a long-form magazine article—see Will Saletan’s great series on memory manipulation for a recent example.

And now I’ve blown through 700 words in the service of an extended, hopefully nuanced, discussion. Take from that what you will.

References

Morran, L., Parmenter, M., & Phillips, P. (2009). Mutation load and rapid adaptation favour outcrossing over self-fertilization. Nature, 462 (7271), 350-2 DOI: 10.1038/nature08496

Venditti, C., Meade, A., & Pagel, M. (2009). Phylogenies reveal new interpretation of speciation and the Red Queen. Nature, 463 (7279), 349-52 DOI: 10.1038/nature08630

Science online, #evol2010 hangover edition

Between the all-day conferencing of Evolution 2010 and the fact that car trouble stranded me in Kennewick, Washington, almost exactly halfway between Portland and Moscow, I haven’t done enough online reading to justify my usual end-of the week roundup. I will, however, note a few things:

And, lastly, bluebirds are still frickin’ spectacular photo subjects.

Photo by kevincole.

#evol2010 day 4: In which the race is not always to the swift, and giving up on sex isn’t a dead end

Updated, 2010.06.30: Publish in haste, revise at leisure. I’ve gone back and added some links to original papers mentioned in the talks, and a note on another talk I meant to include (the first in the list, now).
And again, 2010.07.02: Added a specific link to the EvoDevoGeno audiocast, and to Vincent Calcagno’s professional page.

ResearchBlogging.orgThe final day of Evolution 2010 featured a fantastic series of talks in the ASN Young Investigators Symposium, and marked the premiere of the iEvoBio sister conference, which ran concurrently today. Perhaps not surprisingly, the #ievobio tag quickly outran the #evol2010 tag on Twitter.

I’m ending the conference with a final wrap-up audiocast with the crew from Evolution, Development, and Genomics, and then hopefully a quick run before the closing banquet.

A western bluebird arrives at its nest box. Photo by kevincole.

Primary literature referenced

Calcagno, V., Dubosclard, M., & de Mazancourt, C. (2010). Rapid exploiter‐victim coevolution: The race is not always to the swift. The American Naturalist DOI: 10.1086/653665

Duckworth, R., & Kruuk, L. (2009). Evolution of genetic integration between dispersal and colonization ability in a bird. Evolution, 63 (4), 968-77 DOI: 10.1111/j.1558-5646.2009.00625.x

Johnson, M., Smith, S., & Rausher, M. (2009). Plant sex and the evolution of plant defenses against herbivores. Proc. Nat. Acad. Sci. USA, 106 (43), 18079-84 DOI: 10.1073/pnas.0904695106

McGlothlin, J., Jawor, J., & Ketterson, E. (2007). Natural variation in a testosterone‐mediated trade‐off between mating effort and parental effort. The American Naturalist, 170 (6), 864-75 DOI: 10.1086/522838

#evol2010 day 3: In which butterflies self-medicate and Orr conjectures

ResearchBlogging.orgHow do you know it’s getting to be the end of the Evolution 2010 meetings? Because I didn’t get to this until this morning, in the back rows of the SSE symposium on evolutionary prediction. But the third day of the meetings were great, with cool natural history and a great address by SSE president H. Allen Orr.

And don’t forget to check out the daily wrap-up audiocast over at Evolution, Development, and Genomics, which was just endorsed by none other than Carl Zimmer.

A monarch butterfly. Photo by mikebaird.
  • Thierry Lefevre presented evidence that female monarch butterflies infected with a microbial parasite lay their eggs on host plants with more toxins that can fight the parasite.
  • Susan Dudley presented new work on kin recognition in the small annual plant Cakile edentula, in which the plants grow less aggressively if planted next to close relatives.
  • Ian Pearse presented evidence that introduced oak species were more likely to be attacked by a native herbivore if they were more closely related to native oak species.
  • Finally, H. Allen Orr capped the day with an SSE presidential address that focused on what we know—and what we don’t—about how reproductive isolation evolves and creates new species. Orr concluded with three conjectures:
    • Extrinsic postzygotic isolation is usually due to adaptation to ecological conditions,
    • Intrinsic postzygotic isolation is usually due to adaptation to the intrinsic environment within the genome, and
    • Prezygotic isolation is usually due to sexual selection.

    The idea, of course, is to collect the data to test these conjectures. But I’d say these make pretty good sense based on what we already know.

Edit, 2010.06.30: Swapped the original photo for one that actually depicts a monarch butterfly, as discussed in the comments (thanks, Julie!).

Primary literature referenced

Dudley, S., & File, A. (2007). Kin recognition in an annual plant. Biology Letters, 3 (4), 435-8 DOI: 10.1098/rsbl.2007.0232

#evol2010 day 2: In which sexes diverge and reptiles are disparate

ResearchBlogging.orgIn day two, Evolution 2010 is already feeling a mite overwhelming. I started the morning in the SSE symposium on speciation and the origin of dimorphism, then spent the rest of the day bouncing from talk to talk and preparing for my own presentation, which is tomorrow at 9:30. I’m going to bed early tonight, I think.

There’s a new daily wrap-up podcast over at Evolution, Development, and Genomics, and, if you haven’t been following the conference on Twitter, check hashtag #evol2010 or this list of twittering attendees I’ve compiled.

What’s going on with snakes, anyway? Photo by Tambako the Jaguar.

Primary literature referenced

Bolnick, D. I. & Doebeli, M. (2003). Sexual dimorphism and adaptive speciation: Two sides of the same ecological coin. Evolution 57(11):2433-49 DOI: 10.1111/j.0014-3820.2003.tb01489.x.

Butler, M., & King, A. (2004). Phylogenetic comparative analysis: a modeling approach for adaptive evolution. The American Naturalist, 164 (6), 683-95 DOI: 10.1086/426002

#evol2010 day 1: In which chromosomes invert and sources sink

ResearchBlogging.orgThe first day at Evolution 2010 has been a great one. The location in Portland is proving to be great in stereotypical ways: great beer from Rogue Ales, conference t-shirts by American Apparel. There’s pretty good chatter on Twitter this year under the hashtag #evol2010, and in a first for Evolution meeting coverage, there will be daily wrap-up audiocasts (in which I’ll be participating) at the blog Evolution, Development, and Genomics.

Amusingly, we’re sharing the Oregon Convention Center with a “Christian” homeschooling conference, but so far this has led to neither disruptions nor learning experiences.

Some highlights of the talks I’ve attended so far:

  • Jeffrey Feder proposed a new means by which chromosomal inversions might evolve, via a period of allopatric population isolation that allows a locally adaptive inversion to spread, followed by secondary contact during which gene flow creates selective pressure to reduce recombination that could break up the inversion.
  • Simone Des Roches presented new evidence that three lizard species, which have colonized a region of white sand in the New Mexican desert and subsequently evolved “blanched” coloration [PDF], are experiencing ecological release and density compensation. (Simone and her labmate Kayla Hardwick recently discussed their work in blog format.)
  • Chelsea Berns demonstrated that, alone among North American temperate hummingbirds, Ruby-throated hummingbird males have differently-shaped bills from Ruby-throated females.
  • Joel Sachs described the natural frequency and origins of rhizobial bacteria that “cheat” on their host plants.
  • Sheina Sim described host shifts in the apple maggot fly, Rhagoletis pomonella: the fly originally shifted from its native host, hawthorn, to domestic apples [PDF] when they were introduced to North America—now the fly has been introduced to the Pacific Northwest via transport of apples, and some populations have shifted back to hawthorns.
  • The American Society of Naturalists Vice Presidential symposium presented a large volume of work towards discovering the reasons for species’ range boundaries, including great syntheses of population genetic and experimental data for the wildflowers Mimulus cardinalis and Clarkia xantiana—one emerging theme is the importance of the balance of gene flow from healthy populations in the center of ranges to poorly-adapted populations at the edges.

Update, 1950h: The first Evolution 2010 audiocast is now live for download here.

Primary literature referenced

Feder, J., Chilcote, C., & Bush, G. (1988). Genetic differentiation between sympatric host races of the apple maggot fly Rhagoletis pomonella. Nature, 336 (6194), 61-64 DOI: 10.1038/336061a0

Rosenblum, E. (2006). Convergent evolution and divergent selection: lizards at the White Sands ecotone. The American Naturalist, 167 (1), 1-15 DOI: 10.1086/498397

Science online, Portland-bound edition

Just two days after I get back to Moscow from that Santa Barbara, I’m off again to Portland, for Evolution 2010. As in previous years, I’ll try to post daily notes about cool talks I see at the meeting, and maybe some photos of Portland, where the weather is allegedly going to be warm and sunny. In the meantime, here’s what’s been going on in the science blogosphere this week:

Never again? Photo by Vern and Skeet.
  • Still gushing. Earlier this week, BP removed the containment cap on the Gulf of Mexico oil gusher following a mishap with an underwater robot, but it’s back for now. Internal documents suggest that, early on in the disaster, BP knew a lot more oil was flowing than they told the federal government. Hydrology experts are considering how existing flow control structures might be able to use the Mississippi River itself to protect coastal wetlands from oil.
  • Reconsider that sashimi. An environmentalist group is petitioning to protect bluefin tuna, which spawn in the Gulf of Mexico, under the Endangered Species Act. (NY Times)
  • Meanwhile, in even longer-running fossil fuel disasters. In Pennsylvania coal country, underground mine fires burn unchecked. (SEED Magazine)
  • Walk like a man. A newly-discovered fossil of Australopithecus afarensis—the same species as “Lucy”—has a ribcage more like a human’s than an ape’s, suggesting that it stood upright. (A Primate of Modern Aspect)
  • Why did the moose cross the road? Larger mammals with broader home ranges and lower reproductive rates are at greater risk of becoming roadkill. (Conservation Maven)
  • No word about preference for rock’n’roll, though. Attitudes about sex are better predictors of attitudes about drug use and religion than “abstract political ideologies.” (Blag Hag)
  • Wait, there’s software to do that? You never know when the Methods section of an otherwise obscure paper is going to turn up something useful. (NeuroDojo)

And now, a video of aggregating ladybugs.