Science online, yawning opossums edition

Opossums eat lots of disease-carrying ticks. So that’s one thing they’re good for. Photo by graftedno1.

Remember that story about NASA having discovered bacteria using arsenic in place of phosphorous? UBC microbiologist Rosie Redfield ripped into the data underlying that conclusion on her blog RRResearch. (She’s also writing to the journal.) Redfield’s complaints and others prompted a lot of discussion about the the trouble with over-publicized science—see David Dobbs at Neuron Culture and Carl Zimmer on Slate, as well as Zimmer’s comprehensive roundup of scientific criticism of the study. Slate also took the opportunity to re-post an old piece on problems with peer review, but, as Chris Rowan wisely pointed out at Highly Allochthonous, peer review continues after a paper is published, especially in the case of “cutting edge” results like this one.

Meanwhile, in non-arsenic-based science news:

  • “… like the appendix … only more fun.” Scicurious tackles the question of whether female orgasm is adaptive. (Neurotic Physiology)
  • Save the ‘possums. The relationship between mammal diversity, tick host use, and the risk of Lyme disease spread to humans (previously discussed on D&T), rendered into charming narrative form. (EcoTone)
  • Short answer: cancer isn’t smallpox. Why haven’t we cured breast cancer yet? (White Coat Underground)
  • Ho-hum. I mean, wow. Yawning is measurably “contagious” for adult humans, chimpanzees, and dog—but not for children under the age of five. (The Telegraph)
  • Get out and play. Sitting around all day is worse than simply not exercising. (Obesity Panacea)
  • They’re all legs men. Like many other animal species, deep-sea octopodes practice multiple paternity. (SouthernPlayalisticEvolutionMusic)
  • “It’s not just kids who are bullying. Adults are stacking the deck.” Gay teens—especially openly gay teens—”suffer disproportionate punishments by schools and the criminal-justice system.” (Blogtown, NY Times; original article in the journal Pediatrics)

And now, via Craig McClain of Deep Sea News, video that answers the pressing question of what happens when an alligator attacks an electric eel. Don’t watch this if you don’t want to end up feeling bad for the alligator.

Science online, inhospitable conditions edition

Precarious, yes, but he’s protecting his sperm count. Photo by Ed Yourdon.
  • Don’t roast your junk, dude. Scicurious takes on the recent study showing that laptop computers can raise dudes’ scrotal temperatures, putting their sperm at risk. (Neurotic Physiology)
  • In case you needed another reason to hate them. A grad student specializing in mutation repair mechanisms considers the risk of the TSA’s new X-ray backscatter body scanners. (My Helical Tryst)
  • Too late to change the name to Phoenix? The neuroscience blog carnival Encephalon is back, in spades. (A Blog Around the Clock)
  • It’s that time of year again. Bora kicks off the lead-up to ScienceOnline 2011 with a series of posts introducing registered participants. (A Blog Around the Clock)
  • More than cat videos. Jonathan Eisen lists the ways blogging and microblogging have contributed to his scientific career. (The Tree of Life)
  • Actually, it’s just an eternal dissertation defense. Neuroskeptic imagines what scientific Hell would be like. (Neuroskeptic)
  • Waterproof sunscreen, anyone? Depletion of the ozone layer may mean whales are at greater risk of sunburn—and skin cancer. (Mental Floss, original article in Proc. Royal Soc. B)
  • Preadaptation for the win. One of the few Australian predators that can tolerate invasive cane toads is a snake that may have evolved the tolerance in response to selection from toxic prey in its ancestral range. (Oh, For the Love of Science)
  • NASA has not found extraterrestrial life. But it has found bacteria that use arsenic in place of phosphorous, which means there’s one more form extraterrestrial life could take. (Nature News, NY Times, Not Exactly Rocket Science; original article in Science [$a])

Regarding that last item, I’ll give the final word to good ol’ xkcd.

Comic by xkcd.

Science online, Black Friday edition

There may be more going on in those tiny heads than you think. Photo by shadarington.
  • Attention, bacon fans. Epileptic seizures can be controlled by an ultra-high-fat diet. (NY Times)
  • A few mg of prevention. Men who have sex with men can substantially reduce their risk of HIV infection by taking antiretroviral drugs. (NY Times, Dan Savage; original article in The New England Journal of Medicine)
  • Oh, now you tell us. Turkeys have enough social intelligence to recognize other turkeys from their own social group. (Jason Goldman for Scientific American)
  • Mmm. Cranberry genomics. Jason Goldman rounds up Thanksgiving-themed online science writing. (The Thoughtful Animal)
  • Meta-blogging science? The fellows behind Obesity Panacea have launched a blog about science blogging. (Science of Blogging)
  • A pithy comment is beyond the scope of the present linkfest. Incremental publication can be a good thing. (DrugMonkey)
  • Well, that was easy. A simple 15-minute writing assignment closes the “gender gap” between male and female physics students. (Not Exactly Rocket Science)
  • To be fair, science is pretty difficult. The leadership of the American Anthropological Association is moving to remove references to science from the organization’s mission statement. (Fetishes I Don’t Get)

And finally, Robert Krulwich narrates a beautifully animated short film about an enduring mystery of human behavior: our inability to walk in a straight line without help from visual cues.

Science online, sociable tortoises edition

Hey, there! Photo by hankplank.

“Sociable tortoises” would make a pretty good name for a band. I assume they’d be somewhere in the genre phenotype space between Vampire Weekend and The Decemberists.

  • Call it the “smugness threshold.” Higher income is only associated with greater emotional well-being up to a point—but past that point, people with higher incomes still report greater perceived happiness. (Neurotic Physiology)
  • Heads up! Tortoises follow the gaze of other tortoises, indicating unexpected social intelligence. (The Thoughtful Animal)
  • Who knows what a fish is thinking? Siamese fighting fish will famously attack other fish or their own mirror images with equal vigor—but their brains express different genes when looking at their own images! (NeuroDojo)
  • Best paleontological reconstruction illustration ever. Pterosaurs may have launched into the air by “vaulting” on their arms, not jumping with their teeny-tiny legs. (80 Beats)
  • Phylogenies on the witness stand. Ed Yong surveys the use of evolutionary trees as evidence in legal cases. (Not Exactly Rocket Science)
  • Can’t wait to see the phylogeny of the Septuagint. Texts, especially hand-copied manuscripts, mutate over time in much the same way as DNA. (The Atlantic)
  • Especially in Hitchcock’s classic “To Catch a Prairie Dog.” Film scores contain sound patterns strikingly similar to animal alarm calls. (Wired Science; original article at Biology Letters)
  • We are also the beaver. New analysis of fossils identifies the sister group to Castor, the genus containing modern beavers. (Open Source Paleontologist; original article on PLoS ONE; interview with one of the authors)
  • That’s what undergrad field assistants are for. A classic study of bitter taste as predator deterrent had students taste-testing tadpoles. (Wonderland)

Apparently trying to top the transcendent union of “Star Trek” and Monty Python, the Internet presents Harry Potter singing Tom Lehrer. I’ll admit, this upgraded my opinion of Daniel Radcliffe from “Hollywood nerd” to “nerd.”

Science online, oily coral edition

Photo by ucumari.
  • Is anyone really surprised? Biologists working with NOAA have found the first clear evidence that the Gulf of Mexico oil spill is damaging coral reefs. (Deep Sea News)
  • Drink the corn liquor, let the Ritalin be. Could Ritalin help fight cocaine addiction? (Neurotic Physiology)
  • Trade-offs are a bitch. Adaptation for swimming and seal-hunting has made the polar bear’s skull structurally weaker than those of its closest relatives. (Not Exactly Rocket Science)
  • Admixture is fun! Razib Khan examines genetic studies of major human ethnic groups. (Gene Expression)
  • Gotta get funded to do the science. Over at dechronization, Rich Glor lays out tips on writing a doctoral dissertation improvement grant. (Part 1, Part 2, Part 3, Part 4 Part 5)
  • Scientific support for the siesta. A daytime nap can improve memory performance. (BrainBlogger)
  • Hint, hint. Submissions for the Open Lab 2010 collection of online science writing close at the end of the month. (The Thoughtful Animal)
  • This just in. Eating fewer calories than you burn results in weight loss—even when most of those calories are in Twinkies. (Weighty Matters)
  • Because you can’t develop Seasonal Affective Disorder if your brain is too small. Lemur species that live in habitats with greater seasonal changes have larger brains. (NeuroDojo)
  • Paging Dr. Pangloss. Psychologists are surprised to discover that the sight of cooked meat makes men less aggressive. They will no doubt also be surprised to find that it makes men ask for a fork and A-1 Sauce, too. (AOL News, McGill University press release)
  • Science is impossible. But that’s okay. Really. (We, Beasties)

Science online, miracle cure edition

Photo by rpongsaj.
  • Or, you know, the evolution of a super-cold. The discovery of a new way to stop viruses after they’ve already invaded cells could lead to an actual cure for the common cold. (The Independent)
  • Pleistocene Park, anyone? An extremely well-preserved mammoth skeleton unearthed near Denver, Colorado, may contain reasonably intact DNA. (The Denver Post)
  • Not just because of running to catch the bus. People who use public transit tend to be more active in general. (Obesity Panacea)
  • What the !?%$#**! do we know about human mutation rates, anyway? Less than you might think. (John Hawks Weblog)
  • This confirms what I already believe about both anti-vaxxers and corporate PowerPoint use. A GlaxoSmithKline presentation on the importance of vaccination leaves Jason Goldman pondering cognitive bias and the vital importance of good PowerPoint use. (The Thoughtful Animal)
  • All part of a conspiracy by socialist Radiolarians. Analysis of carbon isotopes in sediment cores suggest that a period of climatic warming in the middle Eocene was caused by increased atmospheric carbon dioxide. (Scientific American)
  • WTF is hepato-splen? That’s just one of many questions Scicurious can’t answer about a truly bizarre study investigating the effect of lunar phases on women’s menstrual cycles. (Neurotic Physiology)

Video this week, via io9: German researchers have determined that bats recognize bodies of water by echolocation because, when presented with a metal plate that reflects sound the way water does, they try to drink from it.

Science online, mysterious extra vertebrae edition

Wow. Lots of links this week. I’m using Google Reader again, so evidently getting better at aggregation and/or wasting valuable dissertation-completion time.

Sundews catch insects on their sticky leaves, potentially putting them in competition with web-spinning spiders. Photo by petrichor.
  • Shape up, Dad. Female rats are more prone to develop diabetes if their fathers were obese—through an inherited metabolic disorder. (Neurotic Physiology)
  • Also useful for studying how lizards rebel against their creators. To study how lizards communicate, build a robotic lizard. No, really. (The Thoughtful Animal)
  • Sounds like the basis for a very strange odd-couple sitcom. Can a spider and a plant be competitors? Maybe, if the plant is carnivorous. (It Takes 30)
  • A species in the genus Rosa by any other taxonomic identifier … Rod Page contemplates the importance of taxonomic names to biological research, and how to handle them in modern data structures. (iPhylo)
  • Nobody could’ve predicted. BP’s cost-cutting and rapid corporate expansion probably contributed to a corporate culture prone to accidents. (ProPublica)
  • One more way in which sloths are weird. Almost all mammals—giraffes included—have seven vertebrae in their necks. But sloths have up to 10. A new developmental study suggests how those extra vertebrae evolved. (NY Times, h/t Mike the Mad Biologist)
  • Every little bit helps. A new study suggests that, without modern conservation efforts, the ongoing extinction crisis would be even worse. (Southern Fried Science)
  • Um. Doesn’t that defeat the purpose? Placebos are used all the time in pharmaceutical research, but very few published studies actually report what the placebo was made of. (Helen Jacques)
  • The salmon of doubt. The inaugural article in the Journal of Unusual and Serendipitous Results casts doubt on interpretation of functional MRI readings—when its authors find brain activity in a dead fish. (Byte Size Biology)
  • But it looks so cool when Don Draper does it. Dave Munger ponders the ultimate effectiveness of smoking bans and warnings. (SEED Magazine)
  • “Aspergirls” is one catchy neologism. Steve Silberman continues his exploration of human experience on the Autism spectrum with comedienne Rudy Simone—and opens an ongoing conversation with her at The Well. (NeuroTribes)

More sloth weirdness on video: they can swim! But the water’s a dangerous place, as David Attenborough will tell you.

Science online, electrifying history edition


A hagfish. Photo by kinskarije.
  • But there’s no mention of the mouse who helped him. Dr. Skyskull unwinds the history of Benjamin Franklin’s famous kite experiment, drawing on original reports in Proceedings of the Royal Society. (Skulls in the Stars)
  • $%@!!?#! Saying an expletive aloud actually helps you tolerate pain. (Neurotic Physiology)
  • I’m guessing that animated tattoos will be first. Stretchable sheets of micro-electronic components will have all sorts of science-fictiony medical applications. (All that matters)
  • It’s an even longer way to amphioxus than we thought. MicroRNA analysis suggests that hagfish, long thought to be the most deeply-diverged relatives of vertebrates, aren’t. (Wired Science)
  • On the wrong track. Dave Munger suggests that the same cognitive bias revealed by the “trolly car” dilemma may underlie people’s willingness to believe pseudoscientific explanations for autism. (SEED Magazine)
  • Like calcium carbonate shells, scansion breaks down at low pH. The perils of ocean acidification, explained in (mostly) rhyming couplets. (Deep Sea News)
  • The king of the Red Queen is dead. Leigh Van Valen, originator of the Red Queen hypothesis, died last weekend. (dechronization)
  • There’s so many, we really ought to have some sort of systematic way to classify them. John S. Wilkins tackles species concepts. (Evolving Thoughts)

Video this week is the supplementary information for a recent study of sloth locomotion [$a] (via Wired Science)—the research found that, although they do it upside-down, sloths move a lot like other mammals.

Science online, chasing the rainbow edition

Photo by dachalan.
  • In case you missed it the first time around. BoingBoing marked National Coming Out Day this Monday with great pieces by Maggie Koerth-Baker and Steve Silberman documenting the experiences of sexual minorities in the sciences. See also the personal story of the gay son of a physics professor who called himself “a proud homophobe”, an article in Science Careers, and a forthcoming study of LGBT experiences in engineering [PDF].
  • Lucky for them, they never invented jet travel. Sea anemones—whose common ancestor with humans lived about 600 million years ago—possess some of the same physiological features that give us our circadian rythym. (Dave Munger for SEED Magazine)
  • Gesundheit! A universal flu vaccine may be possible, in the not-too-distant future. (Virology Blog)
  • Congratulations! Ed Yong wins a National Academies Communications Award for Not Exactly Rocket Science.
  • Being somewhat wrong is better than knowing nothing at all. Estimates of the rates at which species arise based on phylogenies still work pretty well if there is uncertainty or error in the phylogeny. (dechronization)
  • Oy. Nature‘s science news feature mistakenly refers to platypuses (platypi? platypodes?) as marsupials. (The Tree of Life)
  • Fossil forests! In commemoration of Wednesday’s National Fossil Day, Anne Jefferson presents a virtual field trip to the John Day Fossil Beds in eastern Oregon. (Highly Allochthonous)
  • To be fair, hoverflies are not very bright. Orchids pollinated by aphid-feeding hoverflies smell like aphids. (LabSpaces)

Science online, “Look out! Here comes the spider worm,” edition

Good news, everyone! We might finally know what’s killing honeybees. Photo by Max xx.
  • I’ll show you my effective population size if you show me yours. Have humans historically been polygamous? Population genetics tells all. (The Primate Diaries in Exile)
  • Spider worm, spider worm/Does whatever a spider worm does. Biologists have engineered spider genes involved in silk production into silkworms, which will spin much more silk than spiders do. (Wired Science)
  • Unintended consequences, anyone? Eradication of dingoes from parts of southern Australia turns out to have been bad for endangered prey species. (Laelaps; see also my discussion of dingoes and prey diversity)
  • It was a fungus. With a virus. In the, um, conservatory. New analysis of proteins collected from bees in dying colonies points to the cause of recent honeybee declines. (NY Times; original article on PLoS ONE)
  • There’s a horror movie here somewhere. Mosquitoes living in the London Underground may have evolved into a new species. (Thoughtomics)
  • Another one for the list. Evolution Since Darwin, a history of 150 years of biology, looks like a good read. (Dechronization)

And this week, from BBC Earth, prairie dog communication. (Which has nothing whatsoever to do with the fact that this week’s mammalogy lab covered rodents.)